PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011552-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 846aa    MW: 93703.7 Da    PI: 6.9828
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011552-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23217318199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F
  SMil_00011552-RA_Salv 217 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLF 303
                            99****************************86333.45679*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + + +el+++++r+
  SMil_00011552-RA_Salv 304 L--RGEAGELRLGIRRA 318
                            *..449999*****996 PP
2Auxin_resp110.91.3e-36343424182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +a+a+s+++ F+v+Y+Pras+++F+++vek++k  +++v vG+Rf+m+f+ +ds+err+sG+v+gv d+dp+rW+nSkWr+L
  SMil_00011552-RA_Salv 343 VANAISSNNSFHVFYSPRASHADFIIPVEKYVKCATSQVPVGTRFRMRFDFDDSPERRFSGVVTGVGDIDPYRWQNSKWRCL 424
                            689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-44208332IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-40210330IPR015300DNA-binding pseudobarrel domain
CDDcd100174.72E-22215317No hitNo description
PfamPF023621.7E-21217318IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098217319IPR003340B3 DNA binding domain
SMARTSM010193.4E-23217319IPR003340B3 DNA binding domain
PfamPF065079.0E-31343424IPR010525Auxin response factor
PROSITE profilePS5174522.081718800IPR000270PB1 domain
SuperFamilySSF542775.4E-11721797No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
LRLFLWLCNA RVTQVFRFKK SRKLGTFFIW ELMEFDLNDA VSEVEKNNAC VNGGECEGGS  60
GDYGCLQTSI SLPPSSSAAS HSSSSSSSCS SPCSESAPPP SIYVELWHAC AGPLTSLPKK  120
GNVVVYFPQG HMEQAASASP FPPMDMPTFD LPPQIFCRVI DVRLLANKEN DEVYTQLNLL  180
PLPELAGVKL DGKESENAGV DEDGNGVMPA KSTSHMFCKT LTASDTSTHG GFSVPRRAAE  240
DCFPPLDYKE QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA  300
VLFLRGEAGE LRLGIRRAAR PRNGLPDSII KNQSSYPNVL SPVANAISSN NSFHVFYSPR  360
ASHADFIIPV EKYVKCATSQ VPVGTRFRMR FDFDDSPERR FSGVVTGVGD IDPYRWQNSK  420
WRCLMVRWDE DIMSNHQERV SPWDIDFSGN YAPLSIQSSP RMKKLRSNLH VTPHGSPIAG  480
GGAVLDFEDS IRSSKVLQGQ ENVGLVSPFY RGDCVNRQLD FGMQPTAPNP VPNRMDKFNY  540
GEFVRNHAPA NFTGFLESNW FPKVLQGQEI CSFKSLAGRS SSDLGVWSKP QHGYSIHNQR  600
PTTPSFYPLA SEGSRSMPIP RKSIHTGGGQ IPLMLSNFSN FQTGNRVLSP TSILSGTKAD  660
VARMPHLTNE PRAQERTSAL KNVNSDNNMT EKVPSCKIFG FSLTEDPAAI NLQGPSKRSC  720
TKVHKQGSLV GRAVDLSRLN GYDDLLTELE MLFNMEGLLR DPNHGWRILY TDSENDMMVV  780
GDDPWHEFID VATKIHIYTQ EEVEKLTVGM NSDDTKSCLE EAPSAPDVSK SSSVGQPDSS  840
PTVIRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-12210545222359Auxin response factor 1
4ldw_A1e-12210545222359Auxin response factor 1
4ldw_B1e-12210545222359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367310.0KX036731.1 Salvia miltiorrhiza auxin response factor ARF11 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089883.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A191T8T20.0A0A191T8T2_SALMI; Auxin response factor
STRINGMigut.N02611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]