PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011523-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 377aa    MW: 42468.5 Da    PI: 5.1936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011523-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11195236854
                            HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             E+rRR +++ ++e Lr l+P++      K++Ka++L  A++YIk+L
  SMil_00011523-RA_Salv 195 SEKRRRVELKGKYESLRLLIPSP-----SKNDKASVLADAIRYIKEL 236
                            6*********************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.351187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-11192248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-12194256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9195236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-9195240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYEENSGLDE SSSMHVDRGG LSQGEDAFSQ THCNNFITEE QSYPQNDVAA LEMELQIEQC  60
FTNNNKIHDM AHHASNWQDI TTGHYQIFAA QASFTDAPDL PAIFPPPSSL LPNFPQKTPA  120
FSASSSSVVY DPLLALNKPP SFRDLFYGGG VYTLGVDERE ANVGFYENGD GVFEFTAAEM  180
GENGDAIKDT KQHSSEKRRR VELKGKYESL RLLIPSPSKN DKASVLADAI RYIKELKRTV  240
TELKDLVERK RFARERLKRP KVEEDDVDPY NGSSLRSSWL HRKSKNTEVD VRIVEDEITV  300
KLVQQKRINC LLFVSKVHDE LQLDLQHVAG GLIGDYYSYL FNSKICEGSI VYARAVATKL  360
IEVVDQHYAA LPPTTTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574500.0KP257450.1 Salvia miltiorrhiza clone 17 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093423.11e-130transcription factor bHLH91-like
TrEMBLA0A0H3YC230.0A0A0H3YC23_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.N01686.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-79bHLH family protein