PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011521-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 172aa MW: 20318.4 Da PI: 9.629 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.8e-31 | 51 | 105 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++F+e+v++LGG++kAtPk il+lmk +gLt+ h+kSHLQkYR+ SMil_00011521-RA_Salv 51 KTRIRWTEDLHKKFIECVDRLGGAKKATPKGILKLMKCDGLTIFHIKSHLQKYRV 105 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.286 | 48 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 49 | 106 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-17 | 49 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-24 | 51 | 105 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-8 | 55 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-16 | 125 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
LSRMQDVGNL RDMNYHQNNI VMENYYYSYS KPQHSFGSKL IASENEAAKH KTRIRWTEDL 60 HKKFIECVDR LGGAKKATPK GILKLMKCDG LTIFHIKSHL QKYRVSELMP EEKEGNSEQV 120 DYKNIVEALR LQIDVQRQLY EQLESQKKLQ MRIEEQAKQL QTMLQCQLKT KN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-23 | 51 | 106 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 51 | 106 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 51 | 106 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 51 | 106 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093383.2 | 3e-67 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020553372.1 | 3e-67 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2 | ||||
Swissprot | Q0WVU3 | 1e-48 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A4D8ZJU6 | 3e-75 | A0A4D8ZJU6_SALSN; Uncharacterized protein | ||||
STRING | XP_010257440.1 | 5e-50 | (Nelumbo nucifera) | ||||
STRING | XP_010423296.1 | 4e-50 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16717 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 4e-51 | G2-like family protein |