PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011473-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 399aa    MW: 45225.4 Da    PI: 4.9536
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011473-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.41.8e-36151062102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+ye+++d+++++++sws++++sf+v+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g
  SMil_00011473-RA_Salv  15 FLAKTYEMVDDPSTDSIVSWSQSNTSFIVWNPPEFSRELLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEGFARG 93 
                            9***************************************************************9998.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            + +ll++i+r+k 
  SMil_00011473-RA_Salv  94 QLHLLKNIHRRKP 106
                            **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-3610104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3911104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-6411104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-211538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-215365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-216678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMDEAPCSSN SVAPFLAKTY EMVDDPSTDS IVSWSQSNTS FIVWNPPEFS RELLPRYFKH  60
NNFSSFIRQL NTYGFRKVDP EQWEFANEGF ARGQLHLLKN IHRRKPVHSH STPNLASLPP  120
LTELERKGYK EDIERLKCEK ESLDVELQRH KDERQDLTLQ MRALAERAQN VEQHHASMLS  180
SLAETLHQPD LMPQMEVHDR KRRFPGNSYM CEGTSTEDCQ RPSSQNLSID SLDADALLTF  240
NKELLDQIDS SMSLWEKMIL EVGQGLGKSN SSLELVESTS CALSPSISYT QLNLDVGGKT  300
SEIDMNSTPR TAPEVQPPTK EQAVVTATNV RTGVNDVFWE QFLTENPGSN SSSEFQLERD  360
ADGKKNENKP GDHAVPWWNM RSVNNLAEQL GHLTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241010424129Heat shock factor protein 1
5d5v_B2e-241010424129Heat shock factor protein 1
5d5v_D2e-241010424129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101446.10.0heat stress transcription factor A-4a
RefseqXP_011101447.10.0heat stress transcription factor A-4a
TrEMBLA0A4D8XUR00.0A0A4D8XUR0_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.M00999.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-101heat shock transcription factor A4A