PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00011430-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 275aa MW: 30235.2 Da PI: 9.2293

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011430-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.3e-13	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + ++lG g+W+ I+r Rt q+ s+ qky SMil_00011430-RA_Salv 95 PWTEEEHKQFLVGLQKLGRGNWRGISRNYVPSRTSTQVASHAQKY 139 7************************9999***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.968	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-16	90	145	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-8	92	142	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.8E-16	93	143	IPR006447	Myb domain, plants
Pfam	PF00249	5.2E-11	95	139	IPR001005	SANT/Myb domain
CDD	cd00167	3.38E-10	95	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-11	95	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MRRCCSHCNT INGDATPTCP TTGGGRGLKL FGVRLTDGSF IKKSASMGNL SRYSAAADTM 60 EGYHSDHLNH TFAARRPPLR NKVKHSHAWG RAGIPWTEEE HKQFLVGLQK LGRGNWRGIS 120 RNYVPSRTST QVASHAQKYF IRQSNATGKK KRPSLFDLAP DTEINSSVPK QSTTIQSPAV 180 IDDDEDLMLT SSQGADINNS LPCLDLSLEP AFTPFLFQLW PPNAYSLKDG AAEVSQHHLV 240 RPVQVISKET MKELVGMSQL TLGETSTVLI DSSQL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072427.1	1e-102	transcription factor MYBS3
TrEMBL	A0A2G9I8G1	1e-106	A0A2G9I8G1_9LAMI; Uncharacterized protein
STRING	evm.model.supercontig_2092.1	1e-67	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11770	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-44	MYB_related family protein