PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00011315-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 535aa MW: 60670.9 Da PI: 6.0056

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011315-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkat SMil_00011315-RA_Salv 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKAT 92 79**************************.99***********6434555777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl SMil_00011315-RA_Salv 93 GKDRKVNS-QTRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 ****.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.979	6	157	IPR003441	NAC domain
Pfam	PF02365	2.8E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDDRECDT PSSGLQDAYA LCRVFKKSLN IPKVGENYVT HPSSTPNYED 180 PPDPSWAHYL SEEAFAFTNN PYPNCAPIFN PPSKVDIALE CARLQHRFSL PPLEVQDYPP 240 AGFPMDQRMQ YSNAFHGNTD QPADIVQEIL SVAQASQQLQ NQETFSGNYA LSDDFSFLLH 300 APDIGSSRYL DNVGEGHNQR SIDIGDNDQF SQTGRMVENL RWVGMSNKEL EKAFVDDFKT 360 VPIENISNIP RDYHDFQGES SNHNFNTFIN TETNDNISIA PRDDHHNVSS DNFLDDGDID 420 DFSSTPNFEL YGKVEVNHGL LVSTRQTPNT FYHKVVPSKT VQVQMNPIII PISKSGFLAS 480 PKMGSSMLKM MKSQDEEDGS SKGRLCGEVM KNIRSYVTFA VALCAIWVRI VTPFA

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDDRECDT PSSGLQDAYA LCRVFKKSLN IPKVGENYVT HPSSTPNYED  180
PPDPSWAHYL SEEAFAFTNN PYPNCAPIFN PPSKVDIALE CARLQHRFSL PPLEVQDYPP  240
AGFPMDQRMQ YSNAFHGNTD QPADIVQEIL SVAQASQQLQ NQETFSGNYA LSDDFSFLLH  300
APDIGSSRYL DNVGEGHNQR SIDIGDNDQF SQTGRMVENL RWVGMSNKEL EKAFVDDFKT  360
VPIENISNIP RDYHDFQGES SNHNFNTFIN TETNDNISIA PRDDHHNVSS DNFLDDGDID  420
DFSSTPNFEL YGKVEVNHGL LVSTRQTPNT FYHKVVPSKT VQVQMNPIII PISKSGFLAS  480
PKMGSSMLKM MKSQDEEDGS SKGRLCGEVM KNIRSYVTFA VALCAIWVRI VTPFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	1	157	15	168	NAC domain-containing protein 19
3swm_B	2e-55	1	157	15	168	NAC domain-containing protein 19
3swm_C	2e-55	1	157	15	168	NAC domain-containing protein 19
3swm_D	2e-55	1	157	15	168	NAC domain-containing protein 19
3swp_A	2e-55	1	157	15	168	NAC domain-containing protein 19
3swp_B	2e-55	1	157	15	168	NAC domain-containing protein 19
3swp_C	2e-55	1	157	15	168	NAC domain-containing protein 19
3swp_D	2e-55	1	157	15	168	NAC domain-containing protein 19
4dul_A	2e-55	1	157	12	165	NAC domain-containing protein 19
4dul_B	2e-55	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096933.1	0.0	NAC domain-containing protein 45
TrEMBL	A0A2G9GMX5	0.0	A0A2G9GMX5_9LAMI; Uncharacterized protein
STRING	Migut.K00745.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1495	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-141	NAC domain containing protein 28