PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00011237-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 377aa MW: 41377.9 Da PI: 5.5799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00011237-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	9.8e-06	250	287	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L SMil_00011237-RA_Salv 250 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 287 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-12	248	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.82E-6	248	291	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-9	252	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MAEEFLQGGV SWWNSPRNLF SWSPCSLASN DGWPTTSVRS SDESAASDGS SSLVIQDHQP 60 PPDAAMMGLD LSPSDAWNQD LLRDSGRSED NYSNLLLDST TTQIKNFSGE DSSMKQANQS 120 FGSAESYSYA SSLLQTLFDT DSQPHPSLLD HQTALSYSSV AAADAHQINS NGFLPKPSPT 180 ANRLWNASPT FPPSDHFFPS SLTNQIHSIA TKHEQGKDLA ATVVKKASNE PAFKRPRIET 240 PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VNALSTPYLK 300 YGAPPVQRQQ MDLVLVPTKR EHRIIAVLTQ AAGDKDKDEE KDLKTRGLYL VPISSTFPVA 360 AETTSDFWTP TFGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MAEEFLQGGV SWWNSPRNLF SWSPCSLASN DGWPTTSVRS SDESAASDGS SSLVIQDHQP  60
PPDAAMMGLD LSPSDAWNQD LLRDSGRSED NYSNLLLDST TTQIKNFSGE DSSMKQANQS  120
FGSAESYSYA SSLLQTLFDT DSQPHPSLLD HQTALSYSSV AAADAHQINS NGFLPKPSPT  180
ANRLWNASPT FPPSDHFFPS SLTNQIHSIA TKHEQGKDLA ATVVKKASNE PAFKRPRIET  240
PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VNALSTPYLK  300
YGAPPVQRQQ MDLVLVPTKR EHRIIAVLTQ AAGDKDKDEE KDLKTRGLYL VPISSTFPVA  360
AETTSDFWTP TFGGSFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086152.1	1e-103	transcription factor bHLH112
TrEMBL	A0A2G9G7E5	1e-101	A0A2G9G7E5_9LAMI; Uncharacterized protein
TrEMBL	A0A4D8Z1W4	1e-102	A0A4D8Z1W4_SALSN; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	1e-92	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	1e-53	bHLH family protein