PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011217-RA_Salv
Common NameSPL9
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 1013aa    MW: 112032 Da    PI: 7.2811
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011217-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314.1e-41130207178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +Cqv++C++dls+ak+yhrrhkvCevhska ++l+ +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  SMil_00011217-RA_Salv 130 MCQVDNCKEDLSTAKDYHRRHKVCEVHSKAGKALIGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 207
                            6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.1E-35125192IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.992128205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37129209IPR004333Transcription factor, SBP-box
PfamPF031103.5E-30131204IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.206.8E-4807906IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.93E-5809912IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.614848869IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.71848869IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MEEVGARIVA PTVIHQHLTA RFCDPYPMAK KRALPFDSSS FLPQNTAESW NPKSWNWDSA  60
RFVAKPLQRN GGQVGVSGEV DDNLVLNLRG GDGARSSGNT GGVNLVEPQT VSRPNKKVRS  120
GSPGGTNYPM CQVDNCKEDL STAKDYHRRH KVCEVHSKAG KALIGNQMQR FCQQCSRFHP  180
LSEFDEGKRS CRRRLAGHNR RRRKTQPEDT TQRLLTPVIG DSNVGDNDVL NLLAVLTSAQ  240
GNIVDRNDKF PLIPNKDQLI QILSKINSLQ LPANLAAKLN GINSNHISSE NQNQINGNAS  300
SASTMNLLAA LSATARAPSS DVFETQSQPS TEGSDSEKSK SPCPEKHGGS TMEFQETSPS  360
VPLKLFSPSP EDYRPKKSPP DRNFLSSGSS YPSDETSPLS TPPVVHDLFP MQTSRDTDKN  420
DHLSNSEGEI ATINGCSTSL QLFGVSISGT EDVPAHTSPY RAGYTSSSAS DHSSQNSDAQ  480
DRTGRIIFKL FDKDPSHMPG SLRDQIYNWL SNSPSEMESY IRPGCIVLSL YLSMPSFAWD  540
QLEDNLLNYV KSLVKDIDID FWGNGRFLIH TDRQMVSHKE GKIRLCKSLR AWSTPELISV  600
SPVAVVGGQQ TTLLLRGRSL KAPGTRIHCT QAVGYNIREV HSSLCHKTPY DEIILADFKV  660
NGAASNVLGR CFIEVENSLR GSNFPIIIAN STICQELRLL EPEINGTSDI CSDSSTDNIE  720
KTAWVRSREE SLHFLDELGW LFQRKYNSCL FEIPDYRLTR FKFLLVFSVE HDFCALVKAL  780
LDILLELNSG REGLEKESLE LLSEIHLLNR AVRRRCASMV DFLIHYSIVD SSGTSERFIF  840
VPNMAGPGGL TPLHLAASAS SSDDIVDLLT SDRQVGLHSW NSVLDANGLS PHAYALMRNN  900
HSYNALVAQK LADKSNGQVS VTIEDDIKHF QVEMDKEGNT KSHLNRGQQS CSRCAYGYSK  960
RIPGSKGLLQ RPYIHSMLVV AAVCVCVCLF LRGHPFVGRV SPFSWENLEY GTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32121204184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378850.0KF437885.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 9 (SPL9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083361.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A075FJP10.0A0A075FJP1_SALMI; SQUAMOSA promoter binding protein-like 9 (Fragment)
STRINGMigut.C00339.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128871219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Zhang L, et al.
    Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza.
    J Integr Plant Biol, 2014. 56(1): p. 38-50
    [PMID:24112769]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]