PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010893-RA_Salv | ||||||||
Common Name | MYB28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 219aa MW: 24782.1 Da PI: 9.1872 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl SMil_00010893-RA_Salv 14 KGAWTKEEDQRLISYIRAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58 | 2.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde +++++ +lG++ W++Ia +++ gRt++++k++w+++ SMil_00010893-RA_Salv 67 RGNFTEEEDEVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.602 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.69E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.93 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLISYIR AHGEGCWRSL PKSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEVIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLRRG 120 MDPQTHRQIN NRSPTPPLPP EQNNSSSADN STTTTAEEDG GLDLDLSIGI RPSHIKTASF 180 NSPPEVRAMC VCWQLGFGKG QLCINCQSYN GFIHLLTNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 2e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059382 | 0.0 | KF059382.1 Salvia miltiorrhiza MYB-related transcription factor (MYB28) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096483.1 | 1e-98 | myb-related protein 330 | ||||
Swissprot | P81395 | 2e-93 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A059PSL8 | 1e-162 | A0A059PSL8_SALMI; MYB-related transcription factor | ||||
STRING | Migut.C01291.1.p | 1e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-89 | myb domain protein 6 |
Publications ? help Back to Top | |||
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