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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SMil_00010867-RA_Salv |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
HD-ZIP |
| Protein Properties |
Length: 156aa MW: 17792 Da PI: 8.8948 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00010867-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 53.4 | 4.2e-17 | 18 | 71 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ ++++eq++ Le+ F+ n++++ e++ +LA +lg++ rqV +W+qN+Ra+ +
SMil_00010867-RA_Salv 18 HKKRLSEEQVRLLESNFNFNNKLDPEHKSRLALELGVPPRQVAIWYQNKRARNR 71
67789***********************************************98 PP
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| 2 | HD-ZIP_I/II | 102.5 | 3.6e-33 | 18 | 108 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+k+rls+eqv+lLE++F+ ++kL+pe+K++la eLg+ prqva+W+qn+RAR + + lE+d++aL+ ++d++ ++n+rL++ev++Lr
SMil_00010867-RA_Salv 18 HKKRLSEEQVRLLESNFNFNNKLDPEHKSRLALELGVPPRQVAIWYQNKRARNRIQGLEVDHKALQLQLDTVLADNSRLKEEVQRLRL 105
79*************************************************************************************8 PP
HD-ZIP_I/II 90 elk 92
el+
SMil_00010867-RA_Salv 106 ELT 108
886 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 156 aa
Download sequence Send
to blast |
MDDQFPYPTI RKQQQIKHKK RLSEEQVRLL ESNFNFNNKL DPEHKSRLAL ELGVPPRQVA 60
IWYQNKRARN RIQGLEVDHK ALQLQLDTVL ADNSRLKEEV QRLRLELTRA SFASPSSGDE 120
ASNLVSRDNL ERDLYASLVG AGGGPFGAPD GYDFFG
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