PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010780-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 388aa    MW: 41697.1 Da    PI: 8.4781
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010780-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.5e-42102177176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC +dls+ k y+ rhkvC  hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  SMil_00010780-RA_Salv 102 RCQVEGCMVDLSDSKAYYCRHKVCGEHSKSPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 177
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-3496164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.77100177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-39101181IPR004333Transcription factor, SBP-box
PfamPF031101.3E-32103176IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
LREKEKHYFS ASHSPSWHHG PFVRYERGGV AIKKMEKGSS SSSSSSGGGG ADSINGLKFG  60
KKIYFEGVGS RIGGGEEEEA APPRSPAKKG RTAVVQGGQP PRCQVEGCMV DLSDSKAYYC  120
RHKVCGEHSK SPMVIVAGLE QRFCQQCSRF HQLPEFDQGK RSCRRRLAGH NERRRKPPPG  180
PLLSSRYASL SPSVLTGGGL ETDFSAYSTF GGRDPWPDSS KQRGLADQTT STGNFQLPWQ  240
MSSQASPPNL LQGSTTRSSY TAAEDCFSGI SDSTSALSLL SNEPWGSRSQ ALDLGVSSFL  300
AAANGAAGVD PGTPVGRYSS CPSWDFKGDH SLHEMPPDMG LGQISHSHPT NTPYSMDLGL  360
ARPGDGRRHE LEPSGGYDSS GHHMNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291031761184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378870.0KF437887.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 11 (SPL11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078846.11e-145squamosa promoter-binding-like protein 17 isoform X1
TrEMBLA0A075FFN00.0A0A075FFN0_SALMI; SQUAMOSA promoter binding protein-like 11 (Fragment)
STRINGVIT_08s0007g06270.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-54squamosa promoter binding protein-like 9