PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010559-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 490aa    MW: 54450.3 Da    PI: 7.5186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010559-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12310354554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h + Er+RR+++N++f+ Lr+ lP+       K +Ka++L  ++eY++sL
  SMil_00010559-RA_Salv 310 HMISERKRREKLNDSFQILRSFLPPG-----SKKDKASVLSSTTEYLSSL 354
                            8899********************95.....599**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15304372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.034305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.23E-12307359No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14309375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10310354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDSIFHLENG DRAAFLKQMM QAFGCVYICL RCYVPPPYNC LKGLDGIFHE TSTSHGSLAR  60
RLFHVYRESS TYPDSGLIPG IAFASSNPYM KLQSHEFHGL VSSDFQLQFY QTIVLMGCAT  120
GEIELGMSDH NPQVDVETEM KNLIRIHFPH HNDPNQPPSS SSSSLLSLSV DSPEYPPYLF  180
NIPTTTTTAA AAFLPQQTLI SSSSIPPHDQ TIQILSQFRN AQFPSIESED AAMTKAILAV  240
LSSPSTSSTS QHKHIPTAFR RYQANLAPRF ASTPQNHSRF KRAVSFFRKL SLRSRHEIQG  300
NQPTATQLHH MISERKRREK LNDSFQILRS FLPPGSKKDK ASVLSSTTEY LSSLKSQVAE  360
LAKRNLLLES QINSIQKSES GTDEAGSSSS GGGRISVEIA QVSLSSSEAR FLDLRVRGEY  420
SSLLDLVARL IEFLRGQRSV SLRSVESNTR MLGSVAVHAV IMRLGVEGDD EFDESGFREA  480
VKRVVEDQDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313318ERKRRE
2314319RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574750.0KP257475.1 Salvia miltiorrhiza clone 42 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094007.11e-178putative transcription factor bHLH041
TrEMBLA0A0H3YC340.0A0A0H3YC34_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.J00583.1.p1e-153(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-58bHLH family protein