PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00010500-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WOX | ||||||||
Protein Properties | Length: 263aa MW: 28648.9 Da PI: 6.6061 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.9 | 1.1e-15 | 29 | 89 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ SMil_00010500-RA_Salv 29 RSRWTPKPEQILILETIFNSgMVNPPKDETVRIRKLLekfgSVADANVFYWFQNRRSRSRR 89 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.5 | 1.6e-34 | 28 | 91 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G + d+NVfyWFQNr++R+r++q SMil_00010500-RA_Salv 28 VRSRWTPKPEQILILETIFNSGMVNPPKDETVRIRKLLEKFGSVADANVFYWFQNRRSRSRRRQ 91 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.499 | 25 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-13 | 26 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.4E-6 | 27 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-9 | 28 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-13 | 29 | 89 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEDPARATGG SRQQHHGGGG GDASEQPVRS RWTPKPEQIL ILETIFNSGM VNPPKDETVR 60 IRKLLEKFGS VADANVFYWF QNRRSRSRRR QRQVQATLAA DQPPPSRRLP AHHYDQHGFA 120 PPAAANFPPN SFSYAMINSA SSSSSSFGLE ANDGGADDSG CGGFGFSPYP GLMHELEQNP 180 IFGAAEAPTS QIQPPEKYAE MMTVFFNGVA TEVGRGPVDI KSMFGGDFAV FHSSGMAMEA 240 NEYGFLVHGL QHGESYFLVP KLP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137070 | 2e-68 | AC137070.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence. | |||
GenBank | AK063262 | 2e-68 | AK063262.1 Oryza sativa Japonica Group cDNA clone:001-113-A08, full insert sequence. | |||
GenBank | AK111000 | 2e-68 | AK111000.1 Oryza sativa Japonica Group cDNA clone:002-174-E11, full insert sequence. | |||
GenBank | AP014959 | 2e-68 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 2e-68 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069976.1 | 9e-78 | WUSCHEL-related homeobox 11-like | ||||
TrEMBL | A0A4D9AFT8 | 2e-96 | A0A4D9AFT8_SALSN; Uncharacterized protein | ||||
STRING | XP_006479197.1 | 9e-61 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 2e-32 | WUSCHEL related homeobox 12 |