PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00010417-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 700aa    MW: 76812.4 Da    PI: 6.1929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00010417-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-084244561955
                            HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +f++Lre++P++     +K +Ka+ L +++eYI+ Lq
  SMil_00010417-RA_Salv 424 RFQRLREIIPNS----EQKRDKASFLLEVIEYIQFLQ 456
                            69*********8....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.873405455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-12424475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-9424481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5424456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-6424459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
REKERERVER EHVGEGGPAF PGAAERATQL TEKRAAAPPA SRVLEEVLEE TIVLEEGDAA  60
RSSSRTPRVI EFGGGGGSHA GVVYLNWSYS YIAELPLGIL GEDFWREEKN RGECASDLHV  120
GGGSDSELEL FTQNTKICRL RNKLYMELPV GTEGRKATHD FLSLYSSSAA HNQQDPSPSQ  180
GGYLKTHDFL QPLERVGKHV TTTKEDIKAG VAAVDRPPAP APPASVEHLL PGGIGTYSIS  240
YFNQLVLKPE GSLFTAQPTR NDENSNCSSY SGGSFTLWDE SAVKKGKTGK ENIATERHIR  300
EAAQTEPPLS FTKFRLDKIL FYQAGVNVVG GQWAPFLEKP SQSSSNHKHN TTNFSTFSSS  360
QPSSSQKNQS FMDMMTSAKN DQEDDDDDEE EEFTIKKEPS PHSKGNLSVK VEAKTIDQKP  420
NTPRFQRLRE IIPNSEQKRD KASFLLEVIE YIQFLQEKVN RYDSSYNIWN HEPAKMMQWR  480
NCHVSEGFVE RARGTSSDSA PASVFGKKFD ESKAAVSPSL PISGQNLVDS DLSTATTLRE  540
RVVQLPESTS KAATIHSPMQ PNIFTLGGRT TSIPASPISP KQASDLEKAM TWPPSQLRSC  600
TTDTKMTEHE LTIESGTINI SSVYSQGLLN TLTQALQSSG VDLSQASISV QIDLGKKANG  660
VTHSSTFISK EDEVDTTLPR SATASTGKEF GRAAKKLRTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575530.0KP257553.1 Salvia miltiorrhiza clone 121 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078682.10.0transcription factor BIM1 isoform X1
TrEMBLA0A0H3Y9050.0A0A0H3Y905_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D01611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.43e-78bHLH family protein