PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00010241-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 751aa MW: 83334.5 Da PI: 6.2812

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00010241-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	207	225	6	24
-SGGGGTS--TTTTT-SS- CS zf-CCCH 6 CrffartGtCkyGdrCkFa 24 C+f ++ G C+yG C+Fa SMil_00010241-RA_Salv 207 CPFLSKVGPCPYGLACRFA 225 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.207	167	193	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.634	206	231	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	6.8E-73	395	638	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	2.86E-63	399	712	No hit	No description
CDD	cd02801	1.68E-89	399	634	No hit	No description
Pfam	PF01207	9.3E-52	402	669	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	483	501	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
LGVWAYERPT IDLMDLSSHC SPNIQSIHPN DVGLLLPIRE VQASHKPPPL SRSLKPYPST 60 IKPDPNMEDP SPREDISNGV VPAPLPHCQM TAAELVAKAI APVRREFLRP PPVRNCDNSV 120 DKNSDDKEAA QDDGRVSVSA APILKEKKSK RQLKRERRQE QKSVLHICPV VAKSGEVSAC 180 VYNENCRFSH DLEAFKSQKP ADLDGVCPFL SKVGPCPYGL ACRFAGTHKA DDGEATTDDG 240 DRKNSEMNAL TKDVQRLLWK NRMKFPKADA ALKLLGLQGQ GKKTKAGGND NDGKNVANDE 300 KVEGNGCCRE DSAEVLEEDI ADKADVADEV RPPKKTKCST DEACDAPLNG EILHEKDVGE 360 SCKQSEPEAE SIVENFVEDN DKCLKLHPRE KKIIDFRDKL YLAPLTTVGN LPFRRVCKGL 420 GVDITCGEMA MCTNLLQGQA SEWALLRRHS SEDFFGVQIC GAYPDTVTRT VELIEEHCTV 480 DFIDINMGCP IDIVCNKGAG SSLLTKPMRM KSVVQASSTA VSTPVTIKVR TGYFEGKNRV 540 DSLIADMGNW GATAVTVHGR TRQQRYSKLA DWEYIYQCAR AAPSNLQVLG NGDVFSYLDW 600 NAHKSDCPEL STCMIARGAL VKPWIFTEIK EQRHWDITSG ERLNILKDYA RFGLEHWGSD 660 SKGVETTRHF LLEWLSYTCR YIPVGLLDVI PQQINWRPPS YFGRDDLETL MASDSAADWI 720 RLTEMLLGKV PAGFTFAPKH KSNAYDTAEN G

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

LGVWAYERPT IDLMDLSSHC SPNIQSIHPN DVGLLLPIRE VQASHKPPPL SRSLKPYPST  60
IKPDPNMEDP SPREDISNGV VPAPLPHCQM TAAELVAKAI APVRREFLRP PPVRNCDNSV  120
DKNSDDKEAA QDDGRVSVSA APILKEKKSK RQLKRERRQE QKSVLHICPV VAKSGEVSAC  180
VYNENCRFSH DLEAFKSQKP ADLDGVCPFL SKVGPCPYGL ACRFAGTHKA DDGEATTDDG  240
DRKNSEMNAL TKDVQRLLWK NRMKFPKADA ALKLLGLQGQ GKKTKAGGND NDGKNVANDE  300
KVEGNGCCRE DSAEVLEEDI ADKADVADEV RPPKKTKCST DEACDAPLNG EILHEKDVGE  360
SCKQSEPEAE SIVENFVEDN DKCLKLHPRE KKIIDFRDKL YLAPLTTVGN LPFRRVCKGL  420
GVDITCGEMA MCTNLLQGQA SEWALLRRHS SEDFFGVQIC GAYPDTVTRT VELIEEHCTV  480
DFIDINMGCP IDIVCNKGAG SSLLTKPMRM KSVVQASSTA VSTPVTIKVR TGYFEGKNRV  540
DSLIADMGNW GATAVTVHGR TRQQRYSKLA DWEYIYQCAR AAPSNLQVLG NGDVFSYLDW  600
NAHKSDCPEL STCMIARGAL VKPWIFTEIK EQRHWDITSG ERLNILKDYA RFGLEHWGSD  660
SKGVETTRHF LLEWLSYTCR YIPVGLLDVI PQQINWRPPS YFGRDDLETL MASDSAADWI  720
RLTEMLLGKV PAGFTFAPKH KSNAYDTAEN G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	5e-25	396	643	27	266	tRNA-dihydrouridine synthase B
6ei9_B	5e-25	396	643	27	266	tRNA-dihydrouridine synthase B
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Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088543.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A4D9C4R5	0.0	A0A4D9C4R5_SALSN; tRNA-dihydrouridine synthase 3
STRING	Migut.B00123.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8039	19	23

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]