PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009993-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 638aa    MW: 70062.9 Da    PI: 6.9037
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009993-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.24.9e-25203252151
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                            kpr++Wt eLH++Fv av+qL G+ekA+Pk+il++m+v+gL++e+v+SHLQ
  SMil_00009993-RA_Salv 203 KPRVVWTIELHRKFVTAVNQL-GIEKAVPKRILDMMNVEGLSRENVASHLQ 252
                            79*******************.***************************** PP
2Response_reg82.11.8e-27241321109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ ++ll+++l+k +y +v+++ +++ al++++e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++
  SMil_00009993-RA_Salv  24 VLAVDDDPTCLMLLETLLRKCHY-NVTTTNQARIALKMIRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLV 109
                            799********************.***************888889*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d+l+Kp+ +eel++
  SMil_00009993-RA_Salv 110 MKGVTHGACDYLVKPIRIEELRN 132
                            *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1555637IPR017053Response regulator B-type, plant
SuperFamilySSF521721.29E-3621155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-4221158No hitNo description
SMARTSM004481.3E-3222134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.7923138IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.7E-2524133IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.38E-2925138No hitNo description
Gene3DG3DSA:1.10.10.601.9E-24200252IPR009057Homeodomain-like
PROSITE profilePS512949.878200259IPR017930Myb domain
SuperFamilySSF466892.51E-15201254IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-21203253IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
LSCEKMIVEE IRGDAENFPA GMRVLAVDDD PTCLMLLETL LRKCHYNVTT TNQARIALKM  60
IRENKDRFDL VISDVHMPDM DGFKLLELVG LEMDLPVIML SANSDPKLVM KGVTHGACDY  120
LVKPIRIEEL RNIWQHVIRR KKFDSKNQNR SSDLAKAHQA SGEGHGSPLA GNTDQNAKFN  180
RKRKDDEDEI EDNEYEDNGA QKKPRVVWTI ELHRKFVTAV NQLGIEKAVP KRILDMMNVE  240
GLSRENVASH LQAIILLDLC FPLPKYRLYL KRISTVATQQ ANMAAALGVK DSGFMHMGSL  300
EGYGDFRTFT GARLANVALS PYTSGMFGRL NSPGNVNIRN LTPSSLVQPS QAQNLSNSIN  360
SLGKMNLVLP TSNQSPSLFQ GIQPSLDLDP LQHHKGTANF NSINSSRMFR TGSTFTDTGA  420
ALGSSNNLLH SPMSNPQMLH GNSQPPLSGG GFVTHSETFN NGVSDSTNGN WQNSIEASKI  480
HPNPLLSADE PFHSQLPLNG LRDHNSSNGT YLQNNPVGVS SGLALPPFED SREIQCQVGS  540
MGDVQNMNQV PSQSWAEQIQ GSGILNQKTG GRSSSGASAL VQQNGDGRLA TESRSRSNED  600
FLFVQPKLQS GFTPQGYDSL DELVKAMIKR VDNHSTLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22200274264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078598.10.0two-component response regulator ARR12
SwissprotQ6K8X61e-130ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A4D9B6590.0A0A4D9B659_SALSN; Two-component response regulator ARR-B family
STRINGXP_009599949.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-120response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]