PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009735-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 327aa    MW: 36467 Da    PI: 6.2856
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009735-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.9e-28138199159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+ +H+++
  SMil_00009735-RA_Salv 138 LDDGYGWRKYGQKEILGAKHPRGYYRCTYRhahGCLATKQVQRSDEDPTIFEITYRRKHTCN 199
                            59**************************998999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.676133201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-27135200IPR003657WRKY domain
SuperFamilySSF1182909.29E-25137200IPR003657WRKY domain
SMARTSM007749.7E-39138200IPR003657WRKY domain
PfamPF031069.9E-26139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
LMSSPPFSGK GMENFPSDSD LKNLVRELSQ GKEMAKQLQN HLNLHSSSSR ESREFLLHRI  60
MYSYDQALSM LTHNDPAAAA ASQAPLPPHE SPRPVAGSPQ SDDSDQDFTD QTSRKRKASD  120
RWSQKVKVGP EVGVEGQLDD GYGWRKYGQK EILGAKHPRG YYRCTYRHAH GCLATKQVQR  180
SDEDPTIFEI TYRRKHTCNR ATNNQPVPDP RGQDPNPLTQ NPQSEPPFNI QTTLNPPFNF  240
SSSSPINPQN DNIFSDRNNA LGNYYPNPTN DLNADYGELI PNLRHSDSEL SPIVAAMTNS  300
ATLDADFPFG PSGFGSVFDF DNSGHYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-191402021880Disease resistance protein RRS1
5w3x_D2e-191402021880Disease resistance protein RRS1
6ir8_A2e-19138198868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076029.11e-104probable WRKY transcription factor 30
TrEMBLA0A4D9AHG81e-166A0A4D9AHG8_SALSN; Uncharacterized protein
STRINGXP_002513588.14e-76(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-30WRKY DNA-binding protein 30