PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009712-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 519aa    MW: 56248.4 Da    PI: 8.0639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009712-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.2e-11159183226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            +++ C f+++t tCk+G++CkF H+
  SMil_00009712-RA_Salv 159 GEKDCAFYMQTRTCKFGESCKFDHP 183
                            7889********************9 PP
2zf-CCCH35.22.1e-11209235127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++ C++f++t  Ck+G rCkF+H++
  SMil_00009712-RA_Salv 209 PGEPDCPYFLKTQRCKFGVRCKFNHPK 235
                            5789*********************96 PP
3zf-CCCH34.34.1e-11264288327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C f+ +tG Ck+G++CkF+H++
  SMil_00009712-RA_Salv 264 EPPCAFYVKTGKCKFGSTCKFHHPK 288
                            79*********************96 PP
4zf-CCCH391.4e-12333358126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +++e C+f+++tG CkyG++C+++H+
  SMil_00009712-RA_Salv 333 PGEEDCPFYLKTGSCKYGATCRYNHP 358
                            5899*********************9 PP
5zf-CCCH40.16.1e-13417441226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            ++ +C+++++tG+Ck+G++C+F+H+
  SMil_00009712-RA_Salv 417 GQQECDYYMKTGICKFGNNCRFHHP 441
                            6789********************9 PP
6zf-CCCH421.6e-13474496527
                            --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            +C+++++tGtCkyG++CkF H+p
  SMil_00009712-RA_Salv 474 NCPYYMKTGTCKYGATCKFDHPP 496
                            6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.347157185IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4157184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5158184IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4163182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615208236IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5208235IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9210235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5213237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4214234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328261289IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5261288IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8264288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6265288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4266286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61332360IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7332359IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10334358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4338357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028415443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7415443IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7415442IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10417441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5421441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037469497IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7469496IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-11474496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5474496IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5475494IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSNQLYGYTS TTYGGGAGSG SGGSIFNSRS AADAYIPSDS SLLGTSSRYL SADLLSSSSA  60
LSSSLLYNPE SYSRIPRLSA TIPSRSYGPP GVDVAASVPT DPLYAGLKRT SSESLYHQTL  120
LGAHNKIGQT DAWYSSNPLV KRTRYESTSH LPIYPQRPGE KDCAFYMQTR TCKFGESCKF  180
DHPVWVPEGG IPDWKEVPLV PSEALPERPG EPDCPYFLKT QRCKFGVRCK FNHPKDSILP  240
PVSPPGMGAP EDGDISALPE RPSEPPCAFY VKTGKCKFGS TCKFHHPKGV QIQSIGEENL  300
NGLQSNMLGD NKAMQTPFAP ALLHNTKGLP IRPGEEDCPF YLKTGSCKYG ATCRYNHPDR  360
YVINPQAAIA SSLLTSPSAH YNLGVVAPTV SLLPNFDPRI TQTSVGLTTT IYPQRPGQQE  420
CDYYMKTGIC KFGNNCRFHH PVDWSAPTAS ATESPQQNVK LTLAGLPRRE GAINCPYYMK  480
TGTCKYGATC KFDHPPPGEV MAAMTTSSAL GEVKDNGDV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856887.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A4D9BKG60.0A0A4D9BKG6_SALSN; Uncharacterized protein
STRINGMigut.M01488.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)