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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009550-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | SRS | ||||||||
Protein Properties | Length: 296aa MW: 32244.8 Da PI: 7.9917 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 208.7 | 1.5e-64 | 88 | 230 | 4 | 151 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsst 89 +++CqdCGnqakkdC+h RCRtCCksrgfdC+thvkstWvpaakrrer +++ a+ + ++kr re ++++s+l++t SMil_00009550-RA_Salv 88 EGINCQDCGNQAKKDCVHLRCRTCCKSRGFDCQTHVKSTWVPAAKRRERLHHQLALGGGD-------NPKRIREInhGAASASTLACT 168 678**********************************************88877764333.......333333331133455556666 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqG 151 + +s++ +e ++P+ev+s+avfrcvrvs+vdd+ee++aYqta +igGhvfkGiLydqG SMil_00009550-RA_Salv 169 TSRLPSSTSGFELGHFPAEVNSPAVFRCVRVSAVDDAEEHFAYQTALNIGGHVFKGILYDQG 230 66666677789999***********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.3E-60 | 89 | 230 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-27 | 91 | 133 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.3E-26 | 183 | 230 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MSGFFSLGGK EQQQQDPETD TNNSLFVFKN QEIYNKGFEL WQQYYQLHHQ RLHHDVKDTT 60 TAAADESSTY RSASSGLRGM RQGRSGAEGI NCQDCGNQAK KDCVHLRCRT CCKSRGFDCQ 120 THVKSTWVPA AKRRERLHHQ LALGGGDNPK RIREINHGAA SASTLACTTS RLPSSTSGFE 180 LGHFPAEVNS PAVFRCVRVS AVDDAEEHFA YQTALNIGGH VFKGILYDQG RYGGGESSSG 240 SQQQQPLDLI AAAAASSSAV AATTSSQHIT MLDPSVYPTP LSAFMAGTQF FPPPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022894528.1 | 1e-135 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9LQZ5 | 2e-74 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2Z7AIB3 | 1e-117 | A0A2Z7AIB3_9LAMI; SHI-related sequence 7 | ||||
STRING | EOY14902 | 1e-104 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 7e-65 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
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