PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009491-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 265aa MW: 28332.6 Da PI: 9.829 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.3 | 3.7e-22 | 33 | 80 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien++n qvtfskRr+g++KKA+ELS+LC+ae av++fs+ +k + + SMil_00009491-RA_Salv 33 KIENETNLQVTFSKRRAGVFKKASELSTLCGAESAVVVFSPGNKPHSF 80 79***************************************9987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-31 | 24 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.165 | 24 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.45E-34 | 25 | 98 | No hit | No description |
SuperFamily | SSF55455 | 1.05E-25 | 25 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-18 | 26 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 33 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-18 | 46 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-18 | 61 | 82 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MHPTTAATTQ ANPTLRKASK KKGKGRQKIT MAKIENETNL QVTFSKRRAG VFKKASELST 60 LCGAESAVVV FSPGNKPHSF GHPNVETVAN RFLHASGGAP SRSNAADQLI MAHSEAAMQQ 120 RNQELVGTEA ELERERQRKK ELDSLPAPPK LDELDYEQLD RLRKSVMGFK REFEAKVKKG 180 AAAASSSVPA AYGYGGGSGS AATYGYTVHY PPAGDAMLPY NNYGNPASVV QYDAATGTAD 240 ADADANADAA PDTNKFRGFG RHPGF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088150.1 | 1e-69 | agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A4D8Y4S6 | 6e-80 | A0A4D8Y4S6_SALSN; MADS-box transcription factor, plant |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-28 | AGAMOUS-like 62 |