PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009366-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 446aa MW: 51320.9 Da PI: 6.3876

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009366-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.5	8.6e-24	118	217	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +Wt+++v++Li+a++++ e+ ++ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e SMil_00009366-RA_Salv 118 KWTDSMVRLLITAVSYISEEAAAEYgggggarrkyanlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCE 205 7************99999997534455667778888********************************************6699 PP trihelix 75 ssstcpyfdqle 86 ++++ +++d ++ SMil_00009366-RA_Salv 206 VVEKPALLDVMD 217 999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-22	116	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MEGNLSSRSG MQGNTSFGGF DLQGPLRVHH HQQQALAPHH QNLRQGSSMV HHTIHENFPL 60 TMGSNQEEPS FSLTDYNKLD SRGKSASDED DPSFTEDAAD NRSDPSKGKK ASPWQRVKWT 120 DSMVRLLITA VSYISEEAAA EYGGGGGARR KYANLQKKGK WKSVSKVMAE RGHFVSPQQC 180 EDKFNDLNKR YKRLNEILGR GTSCEVVEKP ALLDVMDHIP EKAKEEVRKI LSSKHLHYEE 240 MCSYHNGNRL HLPADPELQR SLRLALRSRD DHDESDAKRH LNEDNDEDDQ EGEYDDHGEY 300 EDNQVLAGDH RAYLLGNSAK RAKQCQTHDE FSFRNSLNSL DCNKTFSFQV ENTDSDANRA 360 PAEGSKTNAI VQKQSLSQWN LQIEEQRLNI EMQMLELEKE KFKWQRFCRK KDRELEIMRM 420 EIERMKLENE RMALDLRRKE LAIDSS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MEGNLSSRSG MQGNTSFGGF DLQGPLRVHH HQQQALAPHH QNLRQGSSMV HHTIHENFPL  60
TMGSNQEEPS FSLTDYNKLD SRGKSASDED DPSFTEDAAD NRSDPSKGKK ASPWQRVKWT  120
DSMVRLLITA VSYISEEAAA EYGGGGGARR KYANLQKKGK WKSVSKVMAE RGHFVSPQQC  180
EDKFNDLNKR YKRLNEILGR GTSCEVVEKP ALLDVMDHIP EKAKEEVRKI LSSKHLHYEE  240
MCSYHNGNRL HLPADPELQR SLRLALRSRD DHDESDAKRH LNEDNDEDDQ EGEYDDHGEY  300
EDNQVLAGDH RAYLLGNSAK RAKQCQTHDE FSFRNSLNSL DCNKTFSFQV ENTDSDANRA  360
PAEGSKTNAI VQKQSLSQWN LQIEEQRLNI EMQMLELEKE KFKWQRFCRK KDRELEIMRM  420
EIERMKLENE RMALDLRRKE LAIDSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	410	KEKFKWQRFCRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074759.1	0.0	uncharacterized protein LOC105159405
TrEMBL	A0A4D8ZD59	0.0	A0A4D8ZD59_SALSN; Uncharacterized protein
STRING	EOY16705	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-115	sequence-specific DNA binding transcription factors