PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00009293-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 331aa MW: 37143.4 Da PI: 5.2245

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00009293-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.2	2.4e-30	165	219	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LH+rFv++v++LGGs+kA Pk+il+lm+ +gLt+ hvkSHLQkYR SMil_00009293-RA_Salv 165 KTRIRWSQDLHDRFVDCVNRLGGSDKARPKAILQLMDTEGLTIFHVKSHLQKYRN 219 68****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-28	162	219	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.99E-16	162	219	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.81	162	222	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.6E-22	165	219	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	169	218	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-19	250	297	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MERLNHSYGF ATTFASELPE FPQNSGAQQQ PDPWPADAIV SRIGSTAAAF YATEAHMGLS 60 RYDLQENAAT FNSCDQFGRS IFVDPSPPKN LIFRPNHLSD QNEHLLILQE KLLGDIDDAS 120 MISPSPPFNP IHDLRGSQNV GASHFGNMNP FGQQAASGNV VTSSKTRIRW SQDLHDRFVD 180 CVNRLGGSDK ARPKAILQLM DTEGLTIFHV KSHLQKYRNV KYAPESMEGR SDKRSNIGSN 240 VAQIDIETGM QIKEALQLQL DVQMRLHEQL EIQRNLQLSI EEQGKKLKMM LDQQQKTTQN 300 LMESNSKSTM EDQDPEVSVS EVSDDNDSQL R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-21	165	222	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	165	222	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	165	222	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	165	222	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	165	222	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075159.1	1e-103	myb family transcription factor PHL5 isoform X1
Swissprot	Q0WVU3	5e-65	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A4D9A4X1	1e-165	A0A4D9A4X1_SALSN; Two-component response regulator ARR-B family
STRING	Migut.J01825.1.p	1e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	6e-57	G2-like family protein