PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009290-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 709aa    MW: 77466.8 Da    PI: 9.6458
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009290-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.4e-101971348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                           +W t+E++ll+ av+++G+  W++Ia++++       + +t+ +c+s++++++
  SMil_00009290-RA_Salv 19 AWGTWEELLLAFAVNRHGTAAWDSIASELQkrtsdpnLCLTAHNCRSKYLDLK 71
                           7**********************************99999*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-51577IPR009057Homeodomain-like
PfamPF002491.4E-81971IPR001005SANT/Myb domain
CDDcd001677.40E-41971No hitNo description
Gene3DG3DSA:1.10.10.603.6E-41952IPR009057Homeodomain-like
SMARTSM002971.2E-9320432IPR001487Bromodomain
SuperFamilySSF473701.18E-14321429IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.0E-13322429IPR001487Bromodomain
PROSITE profilePS5001411.381342413IPR001487Bromodomain
PfamPF004395.3E-9342416IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MTKPDGLAPE TNDDFSPTAW GTWEELLLAF AVNRHGTAAW DSIASELQKR TSDPNLCLTA  60
HNCRSKYLDL KRRFVVRNGD LEGEDGRDEK SNVEESAPLL EELRKLRVAE LRREVQRYDL  120
NIESLELKMK RMEEEREKSQ RREESGADLE NNVEEKRDCE PEAAPAAVGE AAVVGELEKD  180
QLSVNESNST DPGAEKLRAS EAGSEPAGAG GEEVRNDRTG HTSDGPAELK PEPDHKSVRE  240
DSCNGSSNSI EKPDRKAKAE PVAGSTELAE SEAESDGGGA EAMKENSDVQ SSASRSRKEE  300
GSDKVRRGST SGDEREHEDQ SRAVKELSAE SQPLVDFLQA IRAPKIGSIF ERRLRSQETS  360
KYQKLILQHM DLETVESRLK EGWYTGSGSK FYRDLLLLVN NALVFFSKNS SEASAAVEIR  420
RLISKEISHK HAKSDSSSGK QISLQSLSMP KKEDAEPSPS PSLMLKPRIS GSLIVCRKRS  480
SIAKATASSS GTDKKKEPED KDTKQQPSGD ADEPKITKKR TRDRFPAASS ANSKKIGKNQ  540
ATKTSPAESV KQQQQGKGGS SSSQAEAKGD NKKSQSASDS KKRGAANFLS RMKQGSSSNN  600
GVLLDALKNT PLTSESTTGK GGPDQKKSET AKKKEPAASR RGTETRQTKE KEKEKEKEKG  660
SPGKRNVGRP PKRGAAPPPP ALGKRGRDRD KGDIEPAASK QPKKRSRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078831.10.0DNA ligase 1 isoform X1
TrEMBLA0A4D9C7C90.0A0A4D9C7C9_SALSN; Uncharacterized protein
STRINGMigut.K00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-37DNA-binding bromodomain-containing protein