PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00009205-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TALE | ||||||||
Protein Properties | Length: 362aa MW: 40522.2 Da PI: 10.1031 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.3 | 1.7e-10 | 242 | 279 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F+ ++yp+ ++++ LAk++gLt +qV++WF N R + SMil_00009205-RA_Salv 242 FQHflHPYPKNSDKQMLAKQTGLTRSQVSNWFINARVR 279 675569******************************88 PP | |||||||
2 | BELL | 96.9 | 1.7e-31 | 118 | 189 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe q kkakL s+l+eV++r +qy +q+q+++++Fe++ag gsa++Yt+lAlk+i ++FrcLk i+ q+ SMil_00009205-RA_Salv 118 QRQEFQTKKAKLHSMLDEVERRCRQYEQQMQMIVAAFEQAAGTGSARSYTQLALKTILKQFRCLKSTICAQM 189 699******************************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-44 | 57 | 187 | IPR006563 | POX domain |
Pfam | PF07526 | 2.4E-39 | 63 | 185 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 220 | 283 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-10 | 223 | 287 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.29E-12 | 223 | 284 | No hit | No description |
SuperFamily | SSF46689 | 2.31E-17 | 224 | 290 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 226 | 289 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.2E-19 | 240 | 279 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MLVPHAPPPP PPQQDHHYSM WGSNNLQTPP RGLSLSLAAH HQQTGFAKPD HEFPANNSSP 60 PSIMGSKYLK AAQELVDEVV NVGNHRADKA KPIKNPAAAA APSANKDGAA VSDLTTAQRQ 120 EFQTKKAKLH SMLDEVERRC RQYEQQMQMI VAAFEQAAGT GSARSYTQLA LKTILKQFRC 180 LKSTICAQMK ALNKSLGEDQ GSELPRLRFV DRQQVGMLHN NAWRPQRGLP ERAVSVLRAW 240 LFQHFLHPYP KNSDKQMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL QETSIKAEPT 300 ILSDHHHPLT VADNSLSLAL PPAHPFLSHR AFEAYQLIDF HNRKPFPPPD LVASTPASGF 360 IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 8e-17 | 229 | 287 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 8e-17 | 229 | 287 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 9e-17 | 229 | 287 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-17 | 229 | 287 | 5 | 63 | Homeobox protein Meis2 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090301.1 | 1e-107 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011090302.1 | 1e-107 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 4e-86 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A4D8XW43 | 1e-146 | A0A4D8XW43_SALSN; Uncharacterized protein | ||||
STRING | XP_008230296.1 | 1e-103 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 4e-88 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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