PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009205-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TALE
Protein Properties Length: 362aa    MW: 40522.2 Da    PI: 10.1031
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009205-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.31.7e-102422791954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            F+   ++yp+ ++++ LAk++gLt +qV++WF N R +
  SMil_00009205-RA_Salv 242 FQHflHPYPKNSDKQMLAKQTGLTRSQVSNWFINARVR 279
                            675569******************************88 PP
2BELL96.91.7e-31118189172
                   BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            +rqe q kkakL s+l+eV++r +qy +q+q+++++Fe++ag gsa++Yt+lAlk+i ++FrcLk  i+ q+
  SMil_00009205-RA_Salv 118 QRQEFQTKKAKLHSMLDEVERRCRQYEQQMQMIVAAFEQAAGTGSARSYTQLALKTILKQFRCLKSTICAQM 189
                            699******************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-4457187IPR006563POX domain
PfamPF075262.4E-3963185IPR006563POX domain
PROSITE profilePS5007112.455220283IPR001356Homeobox domain
SMARTSM003893.9E-10223287IPR001356Homeobox domain
CDDcd000864.29E-12223284No hitNo description
SuperFamilySSF466892.31E-17224290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-29226289IPR009057Homeodomain-like
PfamPF059209.2E-19240279IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLVPHAPPPP PPQQDHHYSM WGSNNLQTPP RGLSLSLAAH HQQTGFAKPD HEFPANNSSP  60
PSIMGSKYLK AAQELVDEVV NVGNHRADKA KPIKNPAAAA APSANKDGAA VSDLTTAQRQ  120
EFQTKKAKLH SMLDEVERRC RQYEQQMQMI VAAFEQAAGT GSARSYTQLA LKTILKQFRC  180
LKSTICAQMK ALNKSLGEDQ GSELPRLRFV DRQQVGMLHN NAWRPQRGLP ERAVSVLRAW  240
LFQHFLHPYP KNSDKQMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL QETSIKAEPT  300
ILSDHHHPLT VADNSLSLAL PPAHPFLSHR AFEAYQLIDF HNRKPFPPPD LVASTPASGF  360
IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-17229287563Homeobox protein Meis2
3k2a_B8e-17229287563Homeobox protein Meis2
4xrm_A9e-17229287563Homeobox protein Meis2
4xrm_B9e-17229287563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090301.11e-107BEL1-like homeodomain protein 1
RefseqXP_011090302.11e-107BEL1-like homeodomain protein 1
SwissprotQ9SJ564e-86BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A4D8XW431e-146A0A4D8XW43_SALSN; Uncharacterized protein
STRINGXP_008230296.11e-103(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.34e-88BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]