PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008823-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 28544.6 Da PI: 9.0167 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00077 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F++ L H +H SMil_00008823-RA_Salv 123 FRCMICNKAFPSYQALGGHRASH 145 89***********9999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 175 | 197 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F++ L H r+H SMil_00008823-RA_Salv 175 HECPICSKIFPSGQALGGHKRSH 197 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.27 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 7 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.17E-8 | 7 | 29 | No hit | No description |
Pfam | PF13912 | 3.3E-5 | 7 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.17E-8 | 118 | 145 | No hit | No description |
SMART | SM00355 | 0.024 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-11 | 123 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.69E-5 | 172 | 200 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 174 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 175 | 197 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.39 | 175 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 177 | 197 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDENSKHKCK FCSKMFPCGR SLGGHMRSHL INIEKKEERS SEEAALCTKK RSKRYMNLCP 60 RLSEQEEVAL SLILLSMDNS NNTSFDESNS NSRDPRKRSK INDQSEVNSP KIPPSDDNKK 120 CKFRCMICNK AFPSYQALGG HRASHKKFKG CCAPTTPPSP KPPLNLQECK KAKHHECPIC 180 SKIFPSGQAL GGHKRSHLIT DHHTTDERER RIPQVRDFLD LNLPAPLEED CNDQLKPWWI 240 AATHEPLLGR S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072829.1 | 1e-49 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A4D9C417 | 2e-80 | A0A4D9C417_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4481 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 3e-27 | C2H2-like zinc finger protein |