PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008717-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 154aa MW: 17161.2 Da PI: 4.759 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00062 | 15 | 43 | 23 | 54 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksL 54 L +l +s+ ++Ka+i+ A +YI +L SMil_00008717-RA_Salv 15 LEQLRSA---SHSTSVNKASIVVDASRYIEEL 43 3333333...48999**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.7E-5 | 26 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSSRNKKKAA LYQKLEQLRS ASHSTSVNKA SIVVDASRYI EELKERVETL NQDVATLQNS 60 SRQDSLPAVK VETLEKGFLI NVLSEKNCPG LLVSILEAFE ELGLEVLDAR VSCSDNFRLE 120 AISENEGQSD SIDAQVVKRG VLQAIRNWSD EQHD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022859589.1 | 6e-80 | transcription factor bHLH61-like isoform X2 | ||||
TrEMBL | A0A2G9HE70 | 7e-86 | A0A2G9HE70_9LAMI; Uncharacterized protein | ||||
STRING | VIT_08s0058g00960.t01 | 3e-72 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2945 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 8e-09 | bHLH family protein |