PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008702-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 300aa    MW: 33494.5 Da    PI: 6.0569
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008702-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18218251134
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  SMil_00008702-RA_Salv 218 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 251
                            *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.6E-674298IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-15212262IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.176212248IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14215249IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.85E-14215275No hitNo description
CDDcd002021.24E-13217265No hitNo description
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
PfamPF003202.4E-16218251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MECIEARALK PSFLSQMAMK TNSQVYYNDD VWCLTGVNNV VSDDFPVEDL LNLDLPEKDF  60
QELCFSQEDE EISQKGNSLY SSSSSSNFSG DFDSLSVELA VPVEDLENLE WLSQFVDDST  120
PEAKRIPAPN FPVPIPVKAR SKRPRFTGRP WYLASPPLSS ADSSSTTSSS HGSSTLPTFV  180
WSDTVHDSEW FSSAEKPAAK KQKRKTDADS GPVSGRRCTH CQVQKTPQWR TGPLGPKTLC  240
NACGVRFKSG RLFPEYRPAF SPTYSKELHS NSHRKVLEMR QKKEKVVAVE PESIPAVQCQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-133GATA transcription factor 5-like
RefseqXP_020551667.11e-133GATA transcription factor 5-like
SwissprotQ9FH573e-51GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A4D9C5111e-165A0A4D9C511_SALSN; Uncharacterized protein
STRINGMigut.B00182.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.15e-47GATA transcription factor 7