PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008616-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 133aa    MW: 15008.9 Da    PI: 8.5052
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008616-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.81.1e-13462563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                           ++ +r+q+NRe+ArrsR RK++ ++ L   +++L +eN +  + +   ++++ ++++e+
  SMil_00008616-RA_Salv  4 RKRKRMQSNRESARRSRMRKQKHLDDLMAQAAQLRKENAQILSSVGATTQHYVNVEAEN 62
                           6789***************************************9999999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-17164IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-10249No hitNo description
PROSITE profilePS5021710.53265IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-11456No hitNo description
PfamPF001701.2E-10459IPR004827Basic-leucine zipper domain
CDDcd147024.11E-20555No hitNo description
PROSITE patternPS000360722IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDQRKRKRMQ SNRESARRSR MRKQKHLDDL MAQAAQLRKE NAQILSSVGA TTQHYVNVEA  60
ENSVLRAQMM ELTHRLGSLN EILSYINSNS AAVGAGGCMF ESEEFQQVGF GDGGAWNSMG  120
LSHHPIMAEM FDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324RKRKRMQSNRESARRSRMRKQK
21623RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083621.13e-70bZIP transcription factor 44
SwissprotC0Z2L53e-44BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A4D9BCV72e-64A0A4D9BCV7_SALSN; Uncharacterized protein
STRINGMigut.C00766.1.p4e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-46basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]