PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008466-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 354aa    MW: 38652.7 Da    PI: 6.7659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008466-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10109133126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykt+lC+ f++ GtC+y  +C+FaH+
  SMil_00008466-RA_Salv 109 YKTKLCCKFRA-GTCPYVTNCNFAHS 133
                            9**********.*************8 PP
2zf-CCCH17.48e-06180205126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            yk + C+ f+    C+yG++C+F H+
  SMil_00008466-RA_Salv 180 YKGRHCKKFYTEEGCPYGENCTFLHD 205
                            78888********************7 PP
3zf-CCCH42.31.3e-13241266126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt++C+ +  tG+C++G++C+FaHg
  SMil_00008466-RA_Salv 241 WKTRICNKWELTGYCPFGSKCHFAHG 266
                            8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-8105139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-15106141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526108135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011108134IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-9177207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7178207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986179207IPR000571Zinc finger, CCCH-type
SMARTSM003560.17179206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-17237270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10237271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422240268IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9240267IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11241266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
LLLLLEMDFR RDNAFSNANV VQILSGSSGN CGSENWGPGS SDQAIWATED DYGMWSGEAS  60
GDANSNSNYE GTGSQSRSGS EPPSKRSKSS QSGDLVSSNR SKAIGKMFYK TKLCCKFRAG  120
TCPYVTNCNF AHSIEELRKP PPNWQEIMAA HEEDRPVSSE PREEFQIPIV GVTDETQRSY  180
KGRHCKKFYT EEGCPYGENC TFLHDEQSKS RESVAISLGP GSGGQSYGNS AIAVTLKPSN  240
WKTRICNKWE LTGYCPFGSK CHFAHGAAEL HNYGGLDSEG KDCSTPDAKQ APAKTSLDSI  300
LASVASAPYS DGYHLGVPAQ RLSNVVQKTG HRPTQKWKGP DKISKIYGDW IDDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092357.10.0zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ84UQ31e-118C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2G9G2L70.0A0A2G9G2L7_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.N01445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-120C3H family protein