PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008442-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 271aa    MW: 29239.3 Da    PI: 7.8005
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008442-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.74.2e-1527554876
                           SEEETTT--SS--S-STTTT-------S- CS
                    SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76
                           +fh+lsefD++krsCrrrLa+hnerrrk+
  SMil_00008442-RA_Salv 27 QFHQLSEFDQGKRSCRRRLAGHNERRRKP 55
                           7**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.528155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.12E-122759IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.0E-42742IPR004333Transcription factor, SBP-box
PfamPF031102.3E-82754IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MCVVAMSSDM RNVGDPFRIL AGGHSLQFHQ LSEFDQGKRS CRRRLAGHNE RRRKPPAGSL  60
LSPRYGSLSP SIFDRSKSGG FVMDFSTYPA LNGRDLWPDT SSERVMGNQA SITGKYQLPL  120
HSSSQNPLSD LLQGTTPRPS YSGPGASSHG CFDGVPDSTN ALSLLSTQSW GSRTRSTSLG  180
ASNFLGNNGA PPMVQPSINH HGAAIAFAYN QAHDGGLHEM PPDLGRGQTT HGASNEFIGE  240
LGLAQPNEGH FHELDHSRGY DTSLQHINWS L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378820.0KF437882.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 6 (SPL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075166.11e-107squamosa promoter-binding-like protein 9
TrEMBLA0A075FFM31e-177A0A075FFM3_SALMI; SQUAMOSA promoter binding protein-like 6 (Fragment)
STRINGEOY094562e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-18squamosa promoter binding protein-like 9