 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
SMil_00008356-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
HSF |
| Protein Properties |
Length: 290aa MW: 33416.9 Da PI: 7.4508 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00008356-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 113.9 | 1e-35 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg
SMil_00008356-RA_Salv 25 FLSKTYQLVDDPATDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDFFKKG 103
9*****************************************************************99.........*********** PP
XXXXXXXXXXXXXX CS
HSF_DNA-bind 90 kkellekikrkkse 103
+k+ll++i+r+k++
SMil_00008356-RA_Salv 104 EKHLLCEIHRRKTA 117
***********986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MALMVENCES IILSLESQKS VPAPFLSKTY QLVDDPATDH VVSWGEDDTT FVVWRPPEFA 60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDFF KKGEKHLLCE IHRRKTAQPA 120
DHHPPFFPYP SRLSISPPDS DDQHLHYSSP PPPIPSPPDS LTALSEDNER LRRNNHMLMS 180
ELAHMRKLYN DIIYFVQNHV KPVAPSNSYN SSLFLCNSPP PLHNLMTSNK NSSHNFAKVL 240
EEPEPYRTKL FGVPLQSKKR LHSEFNSSNK SRLVLEKDDL GLNLMPPPPC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 5e-21 | 20 | 117 | 16 | 123 | Heat shock factor protein 1 |
| 5d5u_B | 6e-21 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
| 5d5v_B | 6e-21 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
| 5d5v_D | 6e-21 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063952 | 3e-77 | AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence. |
| GenBank | AK099354 | 3e-77 | AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence. |
| GenBank | AY344494 | 3e-77 | AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds. |
