PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008316-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 438aa    MW: 46028.2 Da    PI: 8.5438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008316-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-055375123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  SMil_00008316-RA_Salv 53 FVCEICKKGFQRDQNLQLHRRGH 75
                           89*******************88 PP
2zf-C2H211.50.00096129151123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H + +
  SMil_00008316-RA_Salv 129 WKCDKCSKKYAVQSDWKAHSKIC 151
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.59E-75275No hitNo description
Gene3DG3DSA:3.30.160.608.5E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0395375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6375375IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035522094124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-4117150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.59E-7124149No hitNo description
SMARTSM00355150129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNDSTASGDD SSGNQAATPK AIPKKKRNLP GMPDPDAEVI ALSPKTLMAT NRFVCEICKK  60
GFQRDQNLQL HRRGHNLPWK LRQRSSKDVK KRVYVCPEPS CVHHEPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFNRKDSF ITHRAFCDAL  180
AEETSKPQPA TAPPSADDGP RIAAVVSPPS PPTSASSPLP LAPLPSEAPT PEDSSATDVV  240
SLVLPDNNPA GFSNLFRSIA CPDPTPAIAP SASSEPIALC LAVNQGSSIF GTAGQERRQY  300
PPAPQPVLSA TALLQKAAQM GAAASNASLL RGLGIVSSSS SPSVSREWSQ QHIESDGSSL  360
AAGLGLGLAC DSGSGLKELM LGTPSIFGPK HTTLDLLGLG MAASGGSTGG LSVLMNGGLD  420
VAAATPFDGR EFGGQDIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33125183361Zinc finger protein JACKDAW
5b3h_F1e-33125183361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271958.20.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9LVQ71e-163IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLF6GWY30.0F6GWY3_VITVI; Uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-109C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]