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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008289-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 31648.3 Da PI: 6.5844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL kk++++++ ++ e+d++ +ePw+Lp +k +++ewyfFs rd+kyatg r+nrat sgyWkatgk SMil_00008289-RA_Salv 10 LPPGFRFYPSDEELVCHYLYKKITNEEVLR-GTLVEIDLHVCEPWQLPDVAKLNSNEWYFFSFRDRKYATGFRTNRATVSGYWKATGK 96 79*************************666.78***************87778899******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 d++vl+ ++++vg++ktLvfyk+rap+g+kt W+mhe+rle SMil_00008289-RA_Salv 97 DRTVLDPrTKAVVGMRKTLVFYKNRAPNGTKTGWIMHEFRLE 138 ******866778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-61 | 9 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.73 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGLRDIGETL PPGFRFYPSD EELVCHYLYK KITNEEVLRG TLVEIDLHVC EPWQLPDVAK 60 LNSNEWYFFS FRDRKYATGF RTNRATVSGY WKATGKDRTV LDPRTKAVVG MRKTLVFYKN 120 RAPNGTKTGW IMHEFRLENP HVPPKEDWVL CRVFHKSRSE NSNNFNFDDP SVLATSPNLA 180 TNNEVRLNIT HQNIITSFQS QQGGPNPNPS TSLGLDFDLS RHHHLPYCSA SHDYSHNKMA 240 EATKNEDDYG FLFDFDGPNA VEDMRFVDDS SSVFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 9 | 159 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 9 | 159 | 19 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 9 | 159 | 16 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080062.1 | 1e-125 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q84TE6 | 3e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2G9HEI9 | 1e-132 | A0A2G9HEI9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00437.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 4e-94 | NAC domain containing protein 74 |