PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008219-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28243 Da    PI: 8.3054
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008219-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  SMil_00008219-RA_Salv  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                           79***********************************************96 PP
2K-box94.31.9e-318417410100
                  K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                             +  ++s+++e+ kLk+++e+Lqr qR+llG+dL++L++++L+++e+qLe+slk+iRs++++++l+q+++lq kek + ++nkaL++k
  SMil_00008219-RA_Salv  84 GKDIEQSSYREYLKLKAKYESLQRYQRQLLGDDLGPLNINDLEHIEHQLETSLKHIRSTRTQVMLDQLSDLQSKEKLMLDANKALERK 171
                            55668999******************************************************************************** PP

                  K-box  98 lee 100
                            lee
  SMil_00008219-RA_Salv 172 LEE 174
                            987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-34283IPR002100Transcription factor, MADS-box
CDDcd002656.04E-46278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2685172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.38288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QKCSYGSLEV NHPGKDIEQS SYREYLKLKA KYESLQRYQR QLLGDDLGPL  120
NINDLEHIEH QLETSLKHIR STRTQVMLDQ LSDLQSKEKL MLDANKALER KLEEIYAANQ  180
LQQSWVGGGG EHSNTYAHHH AQSQGFFQPL DCNSTLQIGY SDPVSSSQMT AATEVQNVNG  240
MVPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-30751721101Developmental protein SEPALLATA 3
4ox0_B3e-30751721101Developmental protein SEPALLATA 3
4ox0_C3e-30751721101Developmental protein SEPALLATA 3
4ox0_D3e-30751721101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099041.11e-176developmental protein SEPALLATA 1 isoform X2
SwissprotQ8LLR21e-136MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A4D8YWS01e-173A0A4D8YWS0_SALSN; MADS-box transcription factor, plant
STRINGXP_009608615.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]