PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008214-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 295aa    MW: 30204.2 Da    PI: 10.2523
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008214-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-0997122227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+ C+ f   G Ck+Gd+C+FaHg+
  SMil_00008214-RA_Salv  97 KTKVCNKFKSEGGCKFGDKCHFAHGE 122
                            899*********************96 PP
2zf-CCCH32.71.2e-10263287126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +kt+lC +f + G C +G+rC+FaHg
  SMil_00008214-RA_Salv 263 FKTKLCENFTK-GSCTFGERCHFAHG 287
                            69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356582759IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-44357IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.3574760IPR000571Zinc finger, CCCH-type
PfamPF146080.694757No hitNo description
PfamPF083520.4275121IPR013563Oligopeptide/dipeptide ABC transporter, C-terminal
SMARTSM003568.7E-695122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-1595126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-895126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.59695123IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-797122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.84E-16162239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-16168237IPR004088K Homology domain, type 1
SMARTSM003222.3E-13168238IPR004087K Homology domain
PROSITE profilePS5008414.927169233IPR004088K Homology domain, type 1
PfamPF000131.2E-12171235IPR004088K Homology domain, type 1
CDDcd001052.86E-15171233No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-15259293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8261292IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183262289IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015833Biological Processpeptide transport
GO:0003723Molecular FunctionRNA binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTRKRGRAE FANGGGFKKS KPGVIISFKK EKGKKPLAGT NANTSGCPFG ENCHFLHFVP  60
GGYNAVAQMM NLAPAPTPRA GGGPMHAQNG SAPGAVKTKV CNKFKSEGGC KFGDKCHFAH  120
GEWELGKPIA PSHEDPRGGG GGGGAMPGRF GGGRMEPHVP GPAASFGASA TAKISVDASL  180
AGAVIGKGGV NSKQICRQTG AKLSIRDHET DPNLRNIELE GTFEQIQQAS AMVRELIVSI  240
GPGGGPGKGF GGGGGPASTG SNFKTKLCEN FTKGSCTFGE RCHFAHGAAE LRKTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-152zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-95C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D9AMA21e-143A0A4D9AMA2_SALSN; Uncharacterized protein
STRINGcassava4.1_013023m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-59C3H family protein