PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00008195-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27037.5 Da PI: 6.949 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.6e-08 | 14 | 45 | 20 | 55 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f++Lre++P++ +K +Ka+ L +++eYI+ Lq SMil_00008195-RA_Salv 14 FQRLREIIPNS----EQKRDKASFLLEVIEYIQFLQ 45 9*********8....7*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-12 | 13 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-9 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-6 | 14 | 48 | No hit | No description |
Pfam | PF00010 | 8.7E-6 | 14 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MICHLRYWMA LANFQRLREI IPNSEQKRDK ASFLLEVIEY IQFLQEKVNR YDSSYNIWNH 60 EPAKMMQWDS APASVFGKKF DESKAAVSPS LPISGQNLVD SDLSTATTLR ERVDTSIPAS 120 PISPKQASDL EKAMTWPPSQ LRSCTTDTKM TEHELTIESG TINISSVYSQ GLLNTLTQAL 180 QSSGVDLSQA SISVQIDLGK KANGVTHSST FISKEDEVDT TLPRSATAST GKEFGRAAKK 240 LRTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257522 | 0.0 | KP257522.1 Salvia miltiorrhiza clone 89 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078682.1 | 1e-101 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_011078688.1 | 1e-101 | transcription factor BIM1 isoform X2 | ||||
Swissprot | Q9CAA4 | 4e-45 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A0H3YB53 | 1e-162 | A0A0H3YB53_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.D01611.1.p | 3e-85 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3969 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-47 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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