PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00008151-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 26504.4 Da PI: 9.4346

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008151-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.4e-19	38	91	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k SMil_00008151-RA_Salv 38 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 91 566899***********************************************9 PP
2	HD-ZIP_I/II	129.4	1.4e-41	37	129	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd lk + erL++++e+L SMil_00008151-RA_Salv 37 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSGLKASYDGLKLNFERLQRDNESLL 124 69************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e++e SMil_00008151-RA_Salv 125 KEIRE 129 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-19	23	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	33	93	IPR001356	Homeobox domain
SMART	SM00389	6.3E-18	36	97	IPR001356	Homeobox domain
CDD	cd00086	2.69E-16	38	94	No hit	No description
Pfam	PF00046	2.2E-16	38	91	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.7E-20	40	100	IPR009057	Homeodomain-like
PRINTS	PR00031	5.7E-6	64	73	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.7E-6	73	89	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.9E-16	93	134	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSXPRLKNIA LPRHCSPSAD AAAPKSTRAA VQPHVSEKKR RLSVDQVKAL EKNFEVENKL 60 EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYS GLKASYDGLK LNFERLQRDN 120 ESLLKEIREL KSKLNGDDEE KTRLESEIGD AVLRRAGAAE ERGRGRGLPR AEGEHKLADV 180 DVGEVEEEDV HVRAGEIQAR DGAGRYQAEA GQAGGEAHCP GEGRALAARA RAGKGSDAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	93	RRARWKTKQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2718	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-52	homeobox protein 16