PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008030-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 319aa MW: 36461.7 Da PI: 7.9404

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008030-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.3	1e-28	74	159	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k plW+ev++ m +e g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea SMil_00008030-RA_Salv 74 RWPRQETLTLLEIRSRLDPKFKEANQKSPLWDEVARIMsQEYGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 159 8***********************************8899************************98..55667*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.213	73	132	IPR017877	Myb-like domain
CDD	cd12203	5.84E-20	74	139	No hit	No description
Pfam	PF13837	2.7E-20	74	160	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEDQYGMGDL RQYIDGRPLF PAISQPPDSH RYSYPYDMLI FRPSDSAAIA PSATLSFEAE 60 AGGLAAGGDG SAGRWPRQET LTLLEIRSRL DPKFKEANQK SPLWDEVARI MSQEYGYQRS 120 GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGDSTNNSSA PHFHTNDQLE 180 PYPFSKVSDA SVPDSCDCDT TSSYCTDSNA AYDDDDARMK KRRGKMKSLK AKIEASIEAQ 240 MRSMMEKQEA WMEKMTRAIE GKEQERLLRE EQWRRQDSAR IDGEHKMWAA ERAWIEARDA 300 ALMDAFNKLA GGGGSSPRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	225	MKKRRGKM
2	219	224	KKRRGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547013.1	1e-124	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	6e-85	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A4D9AFT5	1e-175	A0A4D9AFT5_SALSN; Uncharacterized protein
STRING	XP_002528594.1	1e-113	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-78	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]