PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00007940-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 288aa MW: 32555.4 Da PI: 8.9616

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007940-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.3	1.2e-29	39	145	3	108
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 g+kdrhsk++T +g+RdRR+Rls+++a +++dLq++LG+ ++sk ++WLl + k+ i++l+ ++ ++ ++ +++++s s+s s+ SMil_00007940-RA_Salv 39 GGKDRHSKVCTVRGLRDRRIRLSIPTAVQLYDLQEKLGLSQPSKVVDWLLDATKADIDKLPPLPIIPGIFSpNPNQDSPSSSLSQF-L 125 79*************************************************************66666444423333222221111.1 PP TCP 90 aaksaa.kskksqksaasal 108 a+k+a+ k+++++++ +s++ SMil_00007940-RA_Salv 126 ASKQAMiKTHDDERERESTQ 145 22222223333333333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.333	40	98	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.7E-27	40	144	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MNSRERVKQE GSPKLPPARS QWSSSHKNPR IVRVSRSFGG KDRHSKVCTV RGLRDRRIRL 60 SIPTAVQLYD LQEKLGLSQP SKVVDWLLDA TKADIDKLPP LPIIPGIFSP NPNQDSPSSS 120 LSQFLASKQA MIKTHDDERE RESTQKWIQD QNHDEEGFGG FVAQNFFPLG NVVNHQSHFP 180 NFHHNPYFHW DHPNLSLSHQ FGPNYNPPLP NQGQGADPNS HLYFYPNTAP TIPPFPSYLP 240 PSMENVQQNL GFSTALHLMT SPMRPFPLNV ASKPAHEDHA GRSETKED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-17	45	99	1	55	Putative transcription factor PCF6
5zkt_B	3e-17	45	99	1	55	Putative transcription factor PCF6
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00065	PBM	Transfer from AT5G60970	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087359.1	4e-81	transcription factor TCP5
TrEMBL	A0A4D8ZGT5	1e-129	A0A4D8ZGT5_SALSN; Uncharacterized protein
STRING	Migut.D01635.1.p	3e-67	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-41	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5