PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007865-RA_Salv
Common NameSPL13
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 920aa    MW: 102580 Da    PI: 7.057
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007865-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.71.2e-36119188170
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhn 70 
                            +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv+++ qrfCqqCsrfh l+efDe+krsCrrrLa+h 
  SMil_00007865-RA_Salv 119 VCQVEDCKADLSTAKDYHRRHKVCDVHSKATSALVANVVQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHK 188
                            6********************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-32115181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.838117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.14E-33118190IPR004333Transcription factor, SBP-box
PfamPF031102.1E-27120188IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.71E-9703817IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-8713817IPR020683Ankyrin repeat-containing domain
CDDcd002048.72E-7715817No hitNo description
PROSITE profilePS502978.747758818IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
METKFGGKLH NFYGPVVSEV GKKSTEWDLN DWKWDGDLFM ASPLNPAPTD CTSRQPFNND  60
EMMIQNEREK RRRVVEVENE EAGGSLNLKL GHQEYPLDES EGKSGKKTKV SGIPSSRAVC  120
QVEDCKADLS TAKDYHRRHK VCDVHSKATS ALVANVVQRF CQQCSRFHVL QEFDEGKRSC  180
RRRLAGHKDG GGKHILRIYL TIAVNSSDQT KDQDLLSHLL KNLASVASTT NERNHTEILP  240
VSQDMQNVGT SLGAAQKDLP TTTGLDASVL TKTRALTDKT AGGVVQNAST SVSPLVFRTN  300
ASNSVQEKTD TIRRTQVNNI DLNNEYDGSQ DCLEEGLPDT CARKNLGDMS PAGPLWLYKD  360
SQRSSPPQNS GNSGSTSSQS PSTSSGETQS RTDRIVFKLF GKDPNDFPLV LRKQILDWLS  420
SSPTDMESYI RPGCIILTIY LRMEKSSWDR LYCDLTSSLR RLLDSSTDPF WRTGWIYARV  480
QHRVTFMYNG QVVLDTPLPV KNHQSCRISS IKPIAVTVSE GVQFVVKGYN FSHSTARLLC  540
TLEGKFLIQE NCADMRGGAD SSIEHDEIQS FSFSCAVPDV IGRGFIEVED YGLSSSFFPF  600
IVAEKDVCSE ICTLESLIEL ADAANPDSNA LEIKNKALDF IHEMGWLLHR SHLKVRLGDV  660
DPFPFERLRW LIEFSIDHDW CAVVKKLLSA VFDGIVDLGQ EKSNIQALLD IGLVHRAVRR  720
NCVTMVAFLL SYHLDKTGEH KLVDEDGYLF RPDAMGPGGL TPLHIAASLD SCENVVDALT  780
EDPGSVGIEA WKSARDSSGL TPHDYACLRG HYSYIHLVQR KLNKKPGKGH VVVDIPGVLD  840
KKQKVVKYAP FESEKQCRQC EQKLVYARRR GSVNIYRPAM VSLVAIAAVC VCTALLFKSS  900
PEVFCSFHPF RWELLKYGSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-281191891080squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378890.0KF437889.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 13 (SPL13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100677.10.0squamosa promoter-binding-like protein 1
RefseqXP_020555128.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A075FET00.0A0A075FET0_SALMI; SQUAMOSA promoter binding protein-like 13 (Fragment)
STRINGMigut.G00007.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza.
    J Integr Plant Biol, 2014. 56(1): p. 38-50
    [PMID:24112769]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]