PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007855-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 29384.3 Da PI: 7.7451 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.9 | 1.2e-11 | 58 | 123 | 31 | 90 |
FAR1 31 rtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f+ +eg + ++kk+ ++k rr++++tr gCka+++ ++++dg+++ t++++ HnH+l+ SMil_00007855-RA_Salv 58 YEFYSIREGVKPDSKKDilessvQKKIRRRKPSTRNGCKARITTTLNDDGNYVFTSFSELHNHSLV 123 7899999***9999999****9999999************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-9 | 58 | 123 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLEFCCTNSQ ANEAVKMAVS DDVNNHVDFR RPHSYLPICE DSKKPYVGKV FKTLDEAYEF 60 YSIREGVKPD SKKDILESSV QKKIRRRKPS TRNGCKARIT TTLNDDGNYV FTSFSELHNH 120 SLVTEDVRHL MKFNRKMDES HQMIMLKCAK SNIGPVRAFR IFKELVGSFE EVGCTSKDFK 180 NLSYTMNSYA DGVDAQLLLD RFLSKRETDE CFKCEYLVDE THKVKSLFWS DAVAVQNYSL 240 FGDAVSFDAT YTTNR |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3136 | 2 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-23 | FAR1-related sequence 5 |