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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007808-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 343aa MW: 38817.8 Da PI: 8.8565 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 73.7 | 2e-23 | 21 | 86 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+++fl+l+ ++ + + l+ +a +L v +rRRiYDi+N+Le++++++kkekn+++wkg SMil_00007808-RA_Salv 21 RKEKSLGLLCTNFLRLYDREGVDSIGLDAAALQL---GV--ERRRIYDIVNILEGIGVLQKKEKNQYTWKG 86 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 71.6 | 8.8e-23 | 142 | 221 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 r+eksL+lltq+f+kl+ +se +i++l+ +a +L+ + +++k+RR+YDi+NV+++++liek + k+++rw SMil_00007808-RA_Salv 142 RREKSLGLLTQNFVKLFLCSEVEIISLDGAALALLGDshdrtAMRTKVRRLYDIANVFSSMGLIEKvrdpeSGKPAFRWT 221 689***************************************************************9999999*****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-25 | 19 | 87 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.71E-15 | 21 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.6E-26 | 21 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.1E-20 | 22 | 86 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.6E-21 | 138 | 222 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.4E-28 | 142 | 222 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.84E-11 | 144 | 221 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-17 | 144 | 221 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
LKSVAVMASR DSRTKDAFYC RKEKSLGLLC TNFLRLYDRE GVDSIGLDAA ALQLGVERRR 60 IYDIVNILEG IGVLQKKEKN QYTWKGFAAI SGALEVLKEQ GEKEEFHTYI TNVSNEKERS 120 LLSDSKTECP DKCSKSDKGE HRREKSLGLL TQNFVKLFLC SEVEIISLDG AALALLGDSH 180 DRTAMRTKVR RLYDIANVFS SMGLIEKVRD PESGKPAFRW TSVGRSRNRS SIASDGKNCK 240 RRAFGDDITN TSVKKCKTIA LTEQHQKYSS KDFVFGPFAP NVSMVESHET SKDGQIQNWD 300 NLFCAHRPQY SNKAVGDLFH HYAEAWSNWR DEAKDKQQIE HGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-37 | 21 | 208 | 4 | 222 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554916.1 | 1e-163 | E2F transcription factor-like E2FE isoform X1 | ||||
Swissprot | Q8LSZ4 | 2e-94 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A4D9B206 | 0.0 | A0A4D9B206_SALSN; Uncharacterized protein | ||||
STRING | Migut.H00175.1.p | 1e-161 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2522 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 2e-89 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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