PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007736-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 337aa MW: 36481.6 Da PI: 8.1687 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.5 | 1.9e-34 | 51 | 107 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAa+lGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr++e SMil_00007736-RA_Salv 51 VVTYKECLKNHAATLGGHAVDGCGEFMPSPASNpAEPTSLKCAACGCHRNFHRRDPE 107 589****************************999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-28 | 52 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-30 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.348 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-22 | 54 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.08E-17 | 189 | 260 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 191 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-24 | 199 | 256 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MDLGNSSVKT PEAESETPTR IQPTTKSASA FTNGVLKRHA PLQHFHHHPV VVTYKECLKN 60 HAATLGGHAV DGCGEFMPSP ASNPAEPTSL KCAACGCHRN FHRRDPEDPL PVPPAATPAL 120 EYQPHHRHHP PPPRAGGGNS PNNSPSPPPI SSSYYPSAPH MLLALSHGLS APPPDSNHHS 180 PISAAINPGS TPMLSSSSRK RYRTKFTQFQ KEKMLEFAEK VEWKMQKRDE DAINSFCGEI 240 GVDKGVFKVW MHNNKNTFGK KDHPPPPHLS NSNTTTEIST PPPANGNGNG LSYCNIKEDV 300 HATEELGHQL HLHDNRSSHA HAHAHAHALG TNGSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-20 | 198 | 257 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00387 | DAP | Transfer from AT3G28920 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085755.1 | 1e-125 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LHF0 | 6e-69 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A2G9HG83 | 1e-131 | A0A2G9HG83_9LAMI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_140.55 | 7e-98 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 5e-62 | homeobox protein 34 |
Publications ? help Back to Top | |||
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