PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007552-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 606aa    MW: 67919.7 Da    PI: 7.1837
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007552-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.21.7e-3183167187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++qe+laL+++r+em++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++keg+++r++++s  +++f+qlea
  SMil_00007552-RA_Salv  83 RWPRQETLALLQIRSEMDTAFRDATLKGPLWEQVSRKLGELGYKRSAKKCKEKFENVHKYYKRTKEGRGGRQDGKS--YKFFSQLEA 167
                            8*********************************************************************866665..*******85 PP
2trihelix109.71.8e-34393477186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            rW+k evlaLi++r++me r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +++ +tcpyf++l+
  SMil_00007552-RA_Salv 393 RWPKAEVLALIKLRSSMEPRYQEAGPKGPLWEEISAGMQRIGYSRSAKRCKEKWENINKYFKKVKESNKKR-PQDAKTCPYFNELD 477
                            8*********************************************************************8.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-480142IPR001005SANT/Myb domain
PfamPF138372.8E-2182168No hitNo description
PROSITE profilePS500906.74882140IPR017877Myb-like domain
CDDcd122031.71E-2682147No hitNo description
PROSITE profilePS500907.34386450IPR017877Myb-like domain
SMARTSM007171.5E-4390452IPR001005SANT/Myb domain
PfamPF138371.6E-23392479No hitNo description
Gene3DG3DSA:1.10.10.607.9E-4392449IPR009057Homeodomain-like
CDDcd122032.53E-29393457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MQHQHQQQQS GGGGGPQSLG GYGGGAAAEV VVSDEDQKLG DLGIAEAASP ISSRPPAPAA  60
IRNANFEEMI QATAEAGGSS SNRWPRQETL ALLQIRSEMD TAFRDATLKG PLWEQVSRKL  120
GELGYKRSAK KCKEKFENVH KYYKRTKEGR GGRQDGKSYK FFSQLEALHH NTAAALLPTP  180
SPPIAATAVS LPIPAAVSLP PPDPAAAAAL FGISFSSDSS SSDSEDDDDE MEETELTNQR  240
KRKRSDQGGE SDERMMDFFE GLLKQVMQKQ EAMQQRFLEA IEKREQDRMI REEAWKRQDM  300
ARIAKEHEIA AQERAVSASR DAAIVDFLEK ITGQTIQLPA APRPRPHHGP SRHNHRYLQL  360
HPRWRRRFRR GRTRKKIVED IAGGSASESS SSRWPKAEVL ALIKLRSSME PRYQEAGPKG  420
PLWEEISAGM QRIGYSRSAK RCKEKWENIN KYFKKVKESN KKRPQDAKTC PYFNELDELY  480
RKKILSGGVN VGASSEQLDE MPQRGAFPSN PFADTNIGGE KQPEDMLDKG HRQDTTGNYC  540
NSSLRCSNSD HDLDEDNYEE VDENEEEYDD KDMKMVYELQ FQRQNVGSSN PTARPSAPSS  600
FVAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133KRSAKKCKE
2364375RRRFRRGRTRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081349.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ391171e-117TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A4D8YSB40.0A0A4D8YSB4_SALSN; Uncharacterized protein
STRINGMigut.A01055.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1979133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-65Trihelix family protein