PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007534-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 149aa    MW: 16056.8 Da    PI: 8.4542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007534-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-171767155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ++ykGVr++k +g+Wv+eIr+p   g +  r +lg++ tae Aa a++ a  +l+g
  SMil_00007534-RA_Salv 17 KKYKGVRRRK-WGKWVSEIRVP---G-TpERLWLGSYATAEAAAVAHDVAFYCLRG 67
                           59*****998.**********8...3.69*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-171776No hitNo description
PfamPF008473.0E-91867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-251876IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-181875IPR016177DNA-binding domain
SMARTSM003804.1E-271883IPR001471AP2/ERF domain
PROSITE profilePS5103221.0081877IPR001471AP2/ERF domain
PRINTSPR003677.1E-91930IPR001471AP2/ERF domain
PRINTSPR003677.1E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSSSSDDSYH GGGASQKKYK GVRRRKWGKW VSEIRVPGTP ERLWLGSYAT AEAAAVAHDV  60
AFYCLRGDSS PQNLNFHPVV LPAGAGAGMS PRSVQKAASD AGLATDARLI DSRRSENIGG  120
GMQDQSSWQQ MESSPKSDGF FNISVEDYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12674271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012854922.13e-60PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I85e-43ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A4D8ZDJ52e-75A0A4D8ZDJ5_SALSN; Uncharacterized protein
STRINGMigut.C01360.1.p1e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.15e-35ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]