PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00007497-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C3H

Protein Properties

Length: 440aa MW: 51261.7 Da PI: 9.3875

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007497-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.8e-07	418	437	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f + G C++GdrCkF H SMil_00007497-RA_Salv 418 RCRYFGQ-GRCHFGDRCKFLH 437 7****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	1.41E-7	75	121	No hit	No description
Gene3D	G3DSA:1.10.720.30	8.6E-10	76	121	IPR003034	SAP domain
SMART	SM00513	0.0013	86	120	IPR003034	SAP domain
PROSITE profile	PS50800	10.146	86	120	IPR003034	SAP domain
Pfam	PF02037	2.3E-9	88	119	IPR003034	SAP domain
PROSITE profile	PS50103	15.065	413	440	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-6	414	438	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-4	418	437	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	419	438	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MDFSEEDCLS ESESSSRFSD DSQNDPDFDI EETTLTLSNL SLKRKSKRSK INGDEEMDVE 60 EEGDELDEKD KKSYEIIQKI IEDGRVDRLK VEQCKIYLRK HGLRLSGKKE TLIERIKEHV 120 DIVNGYGGGE AKYPASSFVL NCKGDACKGD IVIFEQNVYE EFSIVSRSAT AGPLGTRIVA 180 GRILKESYGA AKQQHTFTIE VLWSKGEKPL PPLHPLLIKG RNLYRLKTMR QKWEDEGERQ 240 RILFEKHARG DAARSNREVR IQQKEKRKMQ RSTRVVRNEH PNRKQEHERR KPDEVINHLQ 300 QQQHEAQFYT RTQELNIPIH PVNLHQRQPL LATNCNFQRA QHTDSHPSIV PFSKSPTRGS 360 FHEERRLNYP IHPRIISSNP RHPKFPVQHT HKENVGYSQQ IRADRPNAVG NRPIHQQRCR 420 YFGQGRCHFG DRCKFLHELA

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MDFSEEDCLS ESESSSRFSD DSQNDPDFDI EETTLTLSNL SLKRKSKRSK INGDEEMDVE  60
EEGDELDEKD KKSYEIIQKI IEDGRVDRLK VEQCKIYLRK HGLRLSGKKE TLIERIKEHV  120
DIVNGYGGGE AKYPASSFVL NCKGDACKGD IVIFEQNVYE EFSIVSRSAT AGPLGTRIVA  180
GRILKESYGA AKQQHTFTIE VLWSKGEKPL PPLHPLLIKG RNLYRLKTMR QKWEDEGERQ  240
RILFEKHARG DAARSNREVR IQQKEKRKMQ RSTRVVRNEH PNRKQEHERR KPDEVINHLQ  300
QQQHEAQFYT RTQELNIPIH PVNLHQRQPL LATNCNFQRA QHTDSHPSIV PFSKSPTRGS  360
FHEERRLNYP IHPRIISSNP RHPKFPVQHT HKENVGYSQQ IRADRPNAVG NRPIHQQRCR  420
YFGQGRCHFG DRCKFLHELA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548091.1	1e-150	zinc finger CCCH domain-containing protein 62-like isoform X1
Swissprot	Q338N2	2e-77	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	A0A4D8ZCY8	0.0	A0A4D8ZCY8_SALSN; Uncharacterized protein
STRING	Migut.I01108.1.p	1e-138	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3303	8	8

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]