PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007461-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 74aa MW: 8708.42 Da PI: 10.978

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007461-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.6	1.5e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s SMil_00007461-RA_Salv 9 KRIENKINRQVTFAKRRNGMLKKAYELSVLCDAEVALIIFSSKGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.459	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-42	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.91E-38	2	61	No hit	No description
SuperFamily	SSF55455	1.7E-31	2	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.6E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.2E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.6E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.6E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGMLK KAYELSVLCD AEVALIIFSS KGKLYEFCST 60 SRRWKKEMIR LNIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-21	1	61	1	61	MEF2 CHIMERA
6byy_B	1e-21	1	61	1	61	MEF2 CHIMERA
6byy_C	1e-21	1	61	1	61	MEF2 CHIMERA
6byy_D	1e-21	1	61	1	61	MEF2 CHIMERA
6bz1_A	1e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	1e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	1e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	1e-21	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ412058	2e-43	DQ412058.1 Diospyros kaki MADS-box protein (MADS1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773225.1	1e-35	PREDICTED: MADS-box protein CMB1-like isoform X3
Refseq	XP_016498123.1	1e-35	PREDICTED: MADS-box protein CMB1
Swissprot	Q8LLR2	9e-35	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A4D9AYT9	7e-36	A0A4D9AYT9_SALSN; MADS-box transcription factor, plant
STRING	Aquca_002_00913.1	2e-36	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-37	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]