PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007244-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 426aa MW: 47646.5 Da PI: 8.8544

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007244-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k F+r nL+ H r H SMil_00007244-RA_Salv 59 FVCDVCNKGFKRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	11.6	0.00087	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + SMil_00007244-RA_Salv 135 WKCDKCSKKYAVQSDWKAHSKIC 157 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.2E-6	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.0E-7	58	81	No hit	No description
Pfam	PF12171	7.1E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.928	59	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	47	100	130	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-4	123	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.0E-7	130	155	No hit	No description
SMART	SM00355	150	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MEENMSNLTC ASGEASFSSN NENSSQQPMK KKRNQPGHPD PGAEVIALSP RTLMATNRFV 60 CDVCNKGFKR DQNLQLHRRG HNLPWKLKQK SKKEVRRKVY ICPEMGCVHH EPSRALGDLT 120 GIKKHFYRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYRCECGTLF SRRDSFITHR 180 AFCDALAQES ARSNNNNYPL QFTSQDNTPF SIKKEHQNLI LKHEIPPWLS CSPIIGPPPS 240 SLILEDFQDF PQNSNPNPSS SLGPTALPPY HHHYLPPPAA HVSATALLQK AAQMGAKSSS 300 QQFPSPFGVA FSRAGHVTPD GFGPSRDHGL ASYADKAAPL QLHDQMMMMN NAGFHQGPGF 360 SHVDFEQHHH RFHASASGNE GGDNLTRDFL GLRPLSQNDI LSLTGFDSCI NSNSCDENHN 420 QNPKSW

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MEENMSNLTC ASGEASFSSN NENSSQQPMK KKRNQPGHPD PGAEVIALSP RTLMATNRFV  60
CDVCNKGFKR DQNLQLHRRG HNLPWKLKQK SKKEVRRKVY ICPEMGCVHH EPSRALGDLT  120
GIKKHFYRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYRCECGTLF SRRDSFITHR  180
AFCDALAQES ARSNNNNYPL QFTSQDNTPF SIKKEHQNLI LKHEIPPWLS CSPIIGPPPS  240
SLILEDFQDF PQNSNPNPSS SLGPTALPPY HHHYLPPPAA HVSATALLQK AAQMGAKSSS  300
QQFPSPFGVA FSRAGHVTPD GFGPSRDHGL ASYADKAAPL QLHDQMMMMN NAGFHQGPGF  360
SHVDFEQHHH RFHASASGNE GGDNLTRDFL GLRPLSQNDI LSLTGFDSCI NSNSCDENHN  420
QNPKSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	131	196	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-34	131	196	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022885115.1	1e-156	protein indeterminate-domain 11-like
Refseq	XP_022885116.1	1e-156	protein indeterminate-domain 11-like
Swissprot	Q8H1F5	1e-118	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A4D8YGF6	1e-171	A0A4D8YGF6_SALSN; Uncharacterized protein
STRING	XP_010242234.1	1e-144	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	9e-97	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]