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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00007193-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22189.9 Da PI: 6.6735 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.4e-34 | 14 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF+Pt+ee+v +yL +k+ +++l++ vi+e+d+++++Pw+L +++e+++yfFs++ + + ++++rat+sg+Wka SMil_00007193-RA_Salv 14 LPPGFRFEPTEEEIVFQYLSRKTFSHPLPA-LVIPEMDVFSLDPWQLA--GDSSEEDMYFFSNSISDE---SERERATASGFWKANAA 95 79**************************99.78**************8..45678899****998865...57899************ PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++ + + vg++k++vfy ++g++t+W+mh+y + SMil_00007193-RA_Salv 96 PKQIHNSwkRMRIVGIRKSFVFY---MRSGVSTHWIMHQYCI 134 ******9877888**********...688999********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-40 | 12 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.446 | 14 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-21 | 15 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEKVNFVRDG GRKLPPGFRF EPTEEEIVFQ YLSRKTFSHP LPALVIPEMD VFSLDPWQLA 60 GDSSEEDMYF FSNSISDESE RERATASGFW KANAAPKQIH NSWKRMRIVG IRKSFVFYMR 120 SGVSTHWIMH QYCIALSQQN NCLVRIGDWS LCRIFMRKGG TTTQVDEDAH SFSASSSSSP 180 NYDSTIFNDV SSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-31 | 14 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-31 | 14 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-31 | 14 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-31 | 14 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 7e-31 | 14 | 158 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-31 | 14 | 158 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-31 | 14 | 158 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073111.1 | 3e-55 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A4D8ZWT5 | 3e-95 | A0A4D8ZWT5_SALSN; Uncharacterized protein | ||||
STRING | Migut.D01296.1.p | 3e-53 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-42 | NAC domain containing protein 41 |