PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007048-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 835aa    MW: 93446.7 Da    PI: 6.4393
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007048-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.6e-23143244199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F
  SMil_00007048-RA_Salv 143 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 229
                            99*****************************7333.34459*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+ +v+r+
  SMil_00007048-RA_Salv 230 L--RGENGELRAGVRRA 244
                            *..44999999999985 PP
2Auxin_resp117.79.9e-39269351183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t+++F+v+Y+Pr+s++eF+v++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+d  rW++SkWr+Lk
  SMil_00007048-RA_Salv 269 AWHAIQTNTMFTVYYKPRTSPAEFIVPYDQYVESLKKNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDADRKRWQDSKWRCLK 351
                            89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-40139258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-40140272IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-20142243No hitNo description
SMARTSM010191.9E-21143245IPR003340B3 DNA binding domain
PfamPF023628.1E-21143244IPR003340B3 DNA binding domain
PROSITE profilePS5086311.575143245IPR003340B3 DNA binding domain
PfamPF065073.4E-36269351IPR010525Auxin response factor
PfamPF023099.6E-11703801IPR033389AUX/IAA domain
SuperFamilySSF542779.32E-11711790No hitNo description
PROSITE profilePS5174522.563713795IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MDASEVLIKG YNDVGGGDPV PGNRNSEAGR VDAERALYTE LWKACAGPLV TVPRENELVF  60
YFPQGHIEQV EASTNQSSDQ QMPVYNLPPK ILCRVVNVQL KAEADTDEVF AQITLMPETN  120
QDENAERKEP PPLPPPHFRV YSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT  180
QELVAKDLHG NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRAG  240
VRRAMRQQGN VPSSVISSHS MHLGVLATAW HAIQTNTMFT VYYKPRTSPA EFIVPYDQYV  300
ESLKKNYSIG MRFKMRFEGE EAPEQRFTGT IVGTEDADRK RWQDSKWRCL KVRWDETSAI  360
VRPERVSPWK IEHTLSPPVL NPVPVPRPKR PRSSVLPSSS ESSVLTREGP TKMTADPAHA  420
NNGFPRVLQG QESSTLRGPF SESNELDSSE KSYLWKPSLE DEKIDVSASR RYGADNWSPL  480
GRPESSFTDL LSGFGTKTNA PRDFSTPLGN QAMSKRQTQD CDAKFSLMGN IWPLMPSGLS  540
LNLMDSSMKN HVQGTDASYL ARGDSRHGSF GDFSIISDPR GDNQGANWSM PPPVSTYLHM  600
RPSQPRELMP KQHAAMKPKE GNCKLFGIPL ISKSAPLEPE ISNRNVLNPS GYSQNLVHSH  660
QFSAFEFDQR SDQSKGLKVG DHGIFASEQE NQFQSFPPSA TDRENKGHSG STRSCTKVQK  720
QGSALGRSVD LTKFNNYDEL ISELDDLFEF GGELKARNKN WLVVYTDDED DMMLVGDDPW  780
VEFCCMVRKL LILTKEEMLR MNPGTLNSKG EDTSSIADGV DANVQSFPSS SPDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1723637218353Auxin response factor 1
4ldw_A1e-1723637218353Auxin response factor 1
4ldw_B1e-1723637218353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367270.0KX036727.1 Salvia miltiorrhiza auxin response factor ARF7 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073189.10.0auxin response factor 2-like
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A191T8S60.0A0A191T8S6_SALMI; Auxin response factor
STRINGMigut.I00613.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]